Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00704 ATGGCCAATTCGTTCAACAATTTGCTTCTTTGTTTGGGATTTGTGGTAATTTTTGGTCAAGCCATGGCTACTAGGTTTATTGATCTCATTGATAATCAAAAGATTGACACGACATGGTATGATGCTCGTGCCACCTTCTACGGCGACATAAGGGGTGATGAAACTATGCAGGGAGCTTGCGGGTATGGAAATTTATTCAAGCAAGGTTATGGGCTAGCAACAGCGGCACTTAGTACAGCACTTTTCAACAACGGTGGAGCTTGTGGAGCATGCTTTGAGATAATGTGTGTGAACAATGAACACAATTGGTGCATACCAAATGCAGGCACAATCAAAATAACGGCCACAAACTTCTGTCCTCCAAACTACACAAAAACACATGACATTTGGTGCAACCCACCCCAACGCCATTTTGATCTATCTCTTTACATGTTCACCAAAATGGCACCTTACAGGGCTGGAGTCATTTCGGTTCGCTATCGTCGGACGCTTTGCCACAAACAGGGCGGCATGCGTTTCGAGCTCAAAGGGAACCCTTATTGGCTTCTTGTGTTGCTCTACAATGTTGGTGGTGCTGGTGATGTTGTTGATGTTAAGATTAAAGGCTCTTCTACTGGCTGGCTTCAAATGTCAAGGAATTGGGGTCAAAATTGGCAGCTTTTTGCAAAGATTCGTTGCCACTCCGCTGGTCGTCCACTGCCGCTGATCATCGGCTTTTGCAGAGATTTGCTATCGTCGCTGGTCGTCCCGTCCAGTCACTTCTTGCCATCGCTGGTCGTCTTGTCTTGTCTGTGCCGCGAGCTCGTGACCAATGGTCGAGGGTTCAACCCTCGATCAATCCCTTTTAAAACCCTCCACAACCCTTCTTCTTCCGATTCCACTTCCTCTCCCATCCTTGTTCCGATTCCACTGCTTTTTGATCTTGCTTCTTCTTCCTCTTCCCATTTGTGTGAACCTCTCGCCTTATTGAAAACTTCTCCCCTATTTTCTCCAAATTTCCTTTTTTACGCTCTTCTCCATCCGAAATTGATCCATATTCTCCATATTCTCCAAATTTGA 1059 45.61 MANSFNNLLLCLGFVVIFGQAMATRFIDLIDNQKIDTTWYDARATFYGDIRGDETMQGACGYGNLFKQGYGLATAALSTALFNNGGACGACFEIMCVNNEHNWCIPNAGTIKITATNFCPPNYTKTHDIWCNPPQRHFDLSLYMFTKMAPYRAGVISVRYRRTLCHKQGGMRFELKGNPYWLLVLLYNVGGAGDVVDVKIKGSSTGWLQMSRNWGQNWQLFAKIRCHSAGRPLPLIIGFCRDLLSSLVVPSSHFLPSLVVLSCLCRELVTNGRGFNPRSIPFKTLHNPSSSDSTSSPILVPIPLLFDLASSSSSHLCEPLALLKTSPLFSPNFLFYALLHPKLIHILHILQI 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 18775024 18781115 + ClCG07G007390.2 Cla07g00704 276692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00704 352 SUPERFAMILY Barwin-like endoglucanases 38 188 IPR036908 -
Cla07g00704 352 Pfam Expansin C-terminal domain 171 222 IPR007117 -
Cla07g00704 352 SMART dpbb_1 74 160 IPR007112 -
Cla07g00704 352 PANTHER EXPANSIN-A15 32 222 IPR002963 GO:0009664
Cla07g00704 352 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 180 257 IPR007117 -
Cla07g00704 352 PRINTS Expansin signature 97 108 IPR002963 GO:0009664
Cla07g00704 352 PRINTS Expansin signature 169 181 IPR002963 GO:0009664
Cla07g00704 352 PRINTS Expansin signature 145 158 IPR002963 GO:0009664
Cla07g00704 352 PRINTS Expansin signature 181 202 IPR002963 GO:0009664
Cla07g00704 352 PRINTS Expansin signature 69 83 IPR002963 GO:0009664
Cla07g00704 352 PRINTS Expansin signature 111 121 IPR002963 GO:0009664
Cla07g00704 352 PRINTS Expansin signature 128 145 IPR002963 GO:0009664
Cla07g00704 352 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 57 170 IPR007112 -
Cla07g00704 352 Gene3D - 170 233 IPR036749 -
Cla07g00704 352 Gene3D - 28 166 IPR036908 -
Cla07g00704 352 PRINTS Expansin/Lol pI family signature 56 74 IPR007118 GO:0005576
Cla07g00704 352 PRINTS Expansin/Lol pI family signature 153 169 IPR007118 GO:0005576
Cla07g00704 352 PRINTS Expansin/Lol pI family signature 207 221 IPR007118 GO:0005576
Cla07g00704 352 PRINTS Expansin/Lol pI family signature 38 53 IPR007118 GO:0005576
Cla07g00704 352 PRINTS Expansin/Lol pI family signature 78 96 IPR007118 GO:0005576
Cla07g00704 352 Pfam Lytic transglycolase 74 160 IPR009009 -
Cla07g00704 352 PANTHER EXPANSIN-A21-RELATED 32 222 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00704 Cla-Chr7:18775024 Cla04g00803 Cla-Chr4:23068149 7.70E-78 dispersed
Cla07g00704 Cla-Chr7:18775024 Cla09g01916 Cla-Chr9:36830486 1.49E-76 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00704 - - bhj:120077708 411.764