Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00724 ATGGCTTCGAATGCTACGGCAGTGACCACATGTCCAACTCCAATGAAAGCAACATCAAACGGGATTTTCCAAGGCGATAATCCTCTTGATTTTGCTCTCCCTCTTGTCATTCTGCAGATATGTTTGGTAGTCGCACTTACTCGTGGTCTTGCTTTTCTTCTCAGGCCGTTAAAACAGCCACGAGTGATTGGAGAAATTATTGGAGGAATACTTCTAGGACCATCAGCTCTTGGACGTAACAAGAACTTTCTTCATACGATATTTCCATCCAATAGTATGACATTGTTAGATACCATAGCAAACATTGGGTTGTTATTCTTTCTCTTTCTTGTGGGTCTTGAGTTAGATCTAAAGTCAATACGTCGTACTGGAAAGAAGGCCTTTGGCATTGCCATTACTGGAATTTGCGTTCCCTTTGCATTAGGAATTGGATCATCATTTGTCCTCCGAGGAACCATATCCAAAGGTGTAAATGCTTCTGCATTTCTCATATTCATGGGTGTTGCACTTTCGATAACAGCCTTTCCCGTCTTAGCTCGCATTCTTGCTGAGCTTAAACTACTGACGACTGATGTTGGCAGGATGGCTATGTCTGCTGCAGCAGTAAATGACGTAGCTGCCTGGATTCTCCTTGCTCTTGCCATTGCATTATCAGGTTCTGATAAATCTCCCCTAACTGCGGTTTGGGTCCTTTTATCTGGCTGCGGCTTTGTTGTGGCTGCTGTCGTCATTTTATCCCCAGTTTTCAAATGGATGACCAAGCAATGTTTTCAAGGGGAGCCTGTACGGGAAATCTACATATGCGCCACATTAGCTATTGTCCTAGCTGCTGGATTTGCCACGGATTTTATTGGGATACATGCTATGTTTGGAGCTTTTGTTGTTGGAGTATTAGTTCCAAAGGATGGACCATTAGTGGGTGCTTTGGTAGAGAAAATAGAGGATCTTGTTTCTGGTCTATTCCTGCCTCTGTACTTTGTCTCAAGTGGATTGAAGACTAATGTAGCCACAATTCAAGGAGCACAGTCCTGGGGTCTTCTAGTTTTAGTTATTGTCACCGCCTGTTCTGGAAAAATCCTTGGCACTTTTCTAGTGTCCCTTCTTTGTAAAGTACCCGTTCGTGAGGCTCTCGCGTTAGGATTTCTAATGAACACAAAAGGTTTGGTGGAGCTTATTGTTCTCAATATTGGAAAAGATAGAAAGGTAAGATTGTTTAAGCCTCTACTATCACTTATCAAAGACACTTTCATGACTGATTTGCCTTCTCTTCTTTTTTTGGTTTTTTGGAGATCTGATTTGCATCGTTGTTTAATTCTGCAGGTTTTGAATGATCAGACCTTTGCAATAATGATTCTAATGGCTCTTTTTACTACTTTCATTACCACTCCCCTTGTCATTGCTGTATACAAGCCAGCAAGGAGTGCCAAATTAGCCGATTATAAACATAGGAAAATCGAACGGAAAAACAAGAATACGCAGCTTCGGATGTTGACCTGTTTCCATAGTGCAGGAAACATTCCATCAATTATAAATCTGCTTGAGGCCTCGAGAGGAATTCAGAAGGGAGAAGAACTTTGTGTATATGCAATGCATCTCATGGAGCTGTCCGAGCGGTCCTCAGCCATTTTAATGGTACATAAGGCCAGGAAAAATGGGTTGCCTTTCTGGAATAAGGGCCAGAGGTCAGATTCCAACCATGTTATTGTTGCGTTTGAAGCTTATCAACAACTGAGCACAGTATTCATCCGAGCGATGACCGCCATTTCCTCCATGTCTGACATACATGAAGATATCTGTGCTACTGCCGAGAGGAAAAGAACTGCAATCATAATTCTTCCATTCCACAAGCACCAGAGGGTGGATGGTTCCCTGGAGACTACTCAAAGCAGCATCCGTGTTGTTAATCAGAATGTCCTCGAGCATGCTCAATGTTCAGTTGGAATTTTCGTTGATCGGGGGTTGGGTGGAACAACCCATGTTTCTTCGAGCAATGTTTCACTTTTCATTGCTGTTCTATTCTTTGGTGGTGGAGATGATCGCGAAGCACTTTCTTATGGAGTTCGTATGGCTGAGCACCCTGGCATTAGGTTGATGGTTATTCGTTTCTTTGTTGAACCCGAGCCTGTTGGGGAGATAGTCAGTGCTGATACTGTTGGGAATTCTTCTGCGAAGATGGTTTCTCAGGATGATGAATTTCTTTCTGAGTTCAGGAACAATGTGAGCAATAACGATTCCGTCATATATGTAGAGAAAACCATAAAAAGTGCTGCAGAAGCAATGGATACAGTACAGGAGCTGAAAAACTGCAATCTGTATCTTGTTGGTCGAACACCGGATGTCAATTCAACCTTTGTCTTAAACAGAAGTGACTGTCCGGAGCTTGGTCCAGTTGGGAACCTGTTGACTTCACCGAACTTCACGATTTCAGCGTCGGTTTTGGTGGTGCAGCAATATCGTTCTGAGTTACTGGTGAATTCGGTTTCAGATTCTGCTGATGGAGAATCAGAATCATCATAA 2517 42.83 MASNATAVTTCPTPMKATSNGIFQGDNPLDFALPLVILQICLVVALTRGLAFLLRPLKQPRVIGEIIGGILLGPSALGRNKNFLHTIFPSNSMTLLDTIANIGLLFFLFLVGLELDLKSIRRTGKKAFGIAITGICVPFALGIGSSFVLRGTISKGVNASAFLIFMGVALSITAFPVLARILAELKLLTTDVGRMAMSAAAVNDVAAWILLALAIALSGSDKSPLTAVWVLLSGCGFVVAAVVILSPVFKWMTKQCFQGEPVREIYICATLAIVLAAGFATDFIGIHAMFGAFVVGVLVPKDGPLVGALVEKIEDLVSGLFLPLYFVSSGLKTNVATIQGAQSWGLLVLVIVTACSGKILGTFLVSLLCKVPVREALALGFLMNTKGLVELIVLNIGKDRKVRLFKPLLSLIKDTFMTDLPSLLFLVFWRSDLHRCLILQVLNDQTFAIMILMALFTTFITTPLVIAVYKPARSAKLADYKHRKIERKNKNTQLRMLTCFHSAGNIPSIINLLEASRGIQKGEELCVYAMHLMELSERSSAILMVHKARKNGLPFWNKGQRSDSNHVIVAFEAYQQLSTVFIRAMTAISSMSDIHEDICATAERKRTAIIILPFHKHQRVDGSLETTQSSIRVVNQNVLEHAQCSVGIFVDRGLGGTTHVSSSNVSLFIAVLFFGGGDDREALSYGVRMAEHPGIRLMVIRFFVEPEPVGEIVSADTVGNSSAKMVSQDDEFLSEFRNNVSNNDSVIYVEKTIKSAAEAMDTVQELKNCNLYLVGRTPDVNSTFVLNRSDCPELGPVGNLLTSPNFTISASVLVVQQYRSELLVNSVSDSADGESESS 838
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 19887424 19890198 + ClCG07G007600.2 Cla07g00724 276712

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00724 838 Pfam Sodium/hydrogen exchanger family 42 464 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cla07g00724 838 Gene3D - 35 416 IPR038770 -
Cla07g00724 838 PANTHER CATION/H + ANTIPORTER 7 402 - -
Cla07g00724 838 PANTHER CATION/H + ANTIPORTER 440 830 - -
Cla07g00724 838 PANTHER CATION/H(+) ANTIPORTER 18 7 402 - -
Cla07g00724 838 PANTHER CATION/H(+) ANTIPORTER 18 440 830 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00724 - - - csv:101223205 1410.97
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00724 Cla-Chr7:19887424 Cla07g00447 Cla-Chr7:6063378 1.48E-126 dispersed
Cla07g00721 Cla-Chr7:19755930 Cla07g00724 Cla-Chr7:19887424 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g75 Blo02g01131 Blo03g00234 Bda06g00131 . . . . . . . . . . . . . . . . . . . . . Cla07g00724 Cam07g0779 Cec07g0842 Cco07g0817 Clacu07g0763 Cmu07g0770 Cre07g1122 . . . . . . . Cme07g01598 . . . . . . . Bma12g00057 . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00626 Chy07g01187 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla02g00055 . 4 822 Antiporter Super Family AT2G13620 70.6 0.0e+00 1152.5
Cla07g00713 . 11 785 Antiporter Super Family AT2G13620 50.4 4.1e-208 721.8
Cla04g00826 . 78 848 Antiporter Super Family AT3G53720 68.9 3.4e-289 991.1
Cla07g00721 . 86 771 Antiporter Super Family AT3G53720 50.1 1.8e-181 633.3
Cla07g00713 . 83 782 Antiporter Super Family AT3G53720 50.3 2.4e-181 632.9
Cla07g00724 . 1 818 Antiporter Super Family AT5G41610 66.7 6.7e-304 1040.0
Cla07g00721 . 7 774 Antiporter Super Family AT5G41610 68.1 1.7e-299 1025.4
Cla07g00713 . 1 785 Antiporter Super Family AT5G41610 66.7 2.0e-295 1011.9
Cla07g00709 . 1 783 Antiporter Super Family AT5G41610 64.8 4.9e-286 980.7
Cla04g00826 . 10 822 Antiporter Super Family AT5G41610 51.0 3.7e-209 725.3
Cla07g00721 . 11 791 Antiporter Super Family AT4G23700 65.2 9.6e-290 993.0
Cla07g00713 . 10 802 Antiporter Super Family AT4G23700 63.8 2.1e-284 975.3
Cla07g00709 . 11 781 Antiporter Super Family AT4G23700 63.0 2.2e-278 955.3
Cla07g00724 . 9 818 Antiporter Super Family AT4G23700 60.5 3.7e-273 937.9
Cla07g00713 . 9 783 Antiporter Super Family AT3G17630 62.4 1.6e-268 922.5
Cla07g00721 . 7 791 Antiporter Super Family AT3G17630 61.4 3.5e-268 921.4
Cla07g00724 . 5 818 Antiporter Super Family AT3G17630 60.9 1.5e-266 916.0
Cla07g00709 . 7 781 Antiporter Super Family AT3G17630 61.0 4.5e-260 894.4
Cla04g00826 . 10 824 Antiporter Super Family AT3G17630 51.3 2.9e-206 715.7
Cla07g00721 . 1 775 Antiporter Super Family AT1G64170 57.8 5.3e-240 827.8
Cla07g00713 . 11 785 Antiporter Super Family AT1G64170 57.6 1.2e-239 826.6
Cla07g00709 . 12 783 Antiporter Super Family AT1G64170 56.6 4.5e-231 798.1
Cla07g00724 . 15 821 Antiporter Super Family AT1G64170 54.4 5.1e-227 784.6
Cla02g00055 . 4 822 Antiporter Super Family AT2G13620 70.6 0.0e+00 1152.5
Cla07g00713 . 11 785 Antiporter Super Family AT2G13620 50.4 4.1e-208 721.8
Cla07g00721 . 1 775 Antiporter Super Family AT1G64170 57.8 5.3e-240 827.8
Cla07g00713 . 11 785 Antiporter Super Family AT1G64170 57.6 1.2e-239 826.6
Cla07g00709 . 12 783 Antiporter Super Family AT1G64170 56.6 4.5e-231 798.1
Cla07g00724 . 15 821 Antiporter Super Family AT1G64170 54.4 5.1e-227 784.6
Cla07g00721 . 11 791 Antiporter Super Family AT4G23700 65.2 9.6e-290 993.0
Cla07g00713 . 10 802 Antiporter Super Family AT4G23700 63.8 2.1e-284 975.3
Cla07g00709 . 11 781 Antiporter Super Family AT4G23700 63.0 2.2e-278 955.3
Cla07g00724 . 9 818 Antiporter Super Family AT4G23700 60.5 3.7e-273 937.9
Cla07g00724 . 1 818 Antiporter Super Family AT5G41610 66.7 6.7e-304 1040.0
Cla07g00721 . 7 774 Antiporter Super Family AT5G41610 68.1 1.7e-299 1025.4
Cla07g00713 . 1 785 Antiporter Super Family AT5G41610 66.7 2.0e-295 1011.9
Cla07g00709 . 1 783 Antiporter Super Family AT5G41610 64.8 4.9e-286 980.7
Cla04g00826 . 10 822 Antiporter Super Family AT5G41610 51.0 3.7e-209 725.3
Cla07g00713 . 9 783 Antiporter Super Family AT3G17630 62.4 1.6e-268 922.5
Cla07g00721 . 7 791 Antiporter Super Family AT3G17630 61.4 3.5e-268 921.4
Cla07g00724 . 5 818 Antiporter Super Family AT3G17630 60.9 1.5e-266 916.0
Cla07g00709 . 7 781 Antiporter Super Family AT3G17630 61.0 4.5e-260 894.4
Cla04g00826 . 10 824 Antiporter Super Family AT3G17630 51.3 2.9e-206 715.7
Cla04g00826 . 78 848 Antiporter Super Family AT3G53720 68.9 3.4e-289 991.1
Cla07g00721 . 86 771 Antiporter Super Family AT3G53720 50.1 1.8e-181 633.3
Cla07g00713 . 83 782 Antiporter Super Family AT3G53720 50.3 2.4e-181 632.9
Cla09g00367 . 108 838 Antiporter Super Family AT3G52080 54.3 1.0e-227 786.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000528 2 8 3 3 2 4 4 4 4 4 4 4 4 3 3 4 4 5 2 4 4 2 2 3 4 4 2 5 5 5 111
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla07g00724 Cla_Chr07 FPKM 21.28071 22.941271 5.157403 5.063338 49.223061 52.033039 54.485355 5.852529 6.185051 6.730127