Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00729 ATGGCTTCCTCTCCAAAGCCTGCCCTTCTTCTTCTTCTTATCTTCTTCTTCTTCTTCTTTTCTTCTTCCTCCTCCTCAACCTCACCATTAAGAAAGAAACAAAAATCCCATCCTTGTAAAGAGCTTGTTCTTTACTTTCATGACATCATTTACAATGGAAGTAATATAGAGAATGCTACTTCAGCCATTGTTGCAGCTCCACAAGGTTCAAACTTAACAGCCTTCGGACCCCAATTTCGATTTGGGGACGTTGTTGTTTTCGATGATCCCATTACTTTGGACAACAATCTCCACTCGGCCCCCGTTGGTCGGGCTCAAGGGATTTATGTTTACGACAACAAAAACATCTTCGCTGCCTGGTTGGGCTTCACATTCTCTCTAAACTCCACGGCATATAAAGGCACCATTAGCTTCGTCGGAGTCGACCCCCTTTTGGTGAATAAGAGGGACATTTCTGTCGTCGGTGGTACCGGAGACTTCTTCATGCACCGCGGCGTTGCCACCATCATCACCGACACCGCCCAAGGAAATGCCTATTTCTGCCTCCAACTTCACACCAAATTTTATGACTGCTGGTGA 579 45.77 MASSPKPALLLLLIFFFFFFSSSSSSTSPLRKKQKSHPCKELVLYFHDIIYNGSNIENATSAIVAAPQGSNLTAFGPQFRFGDVVVFDDPITLDNNLHSAPVGRAQGIYVYDNKNIFAAWLGFTFSLNSTAYKGTISFVGVDPLLVNKRDISVVGGTGDFFMHRGVATIITDTAQGNAYFCLQLHTKFYDCW 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 20336631 20337209 + ClCG07G007650.1 Cla07g00729 276717

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00729 192 Pfam Dirigent-like protein 39 182 IPR004265 -
Cla07g00729 192 PANTHER DIRIGENT PROTEIN 12 192 - -
Cla07g00729 192 PANTHER DIRIGENT PROTEIN 12 192 IPR004265 -
Cla07g00729 192 Gene3D - 24 188 IPR044859 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00729 - - - csv:101214654 266.544
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00729 Cla-Chr7:20336631 Cla06g00097 Cla-Chr6:1020594 2.23E-17 dispersed
Cla07g00727 Cla-Chr7:20210111 Cla07g00729 Cla-Chr7:20336631 5.09E-90 proximal
Cla07g00729 Cla-Chr7:20336631 Cla07g00733 Cla-Chr7:20436440 1.10E-69 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g71 . Blo03g00233 Bda06g00130 . Bpe05g00670 Bpe07g00085 . Bma14g00622 . Cmo16g00622 . . . . . Cpe14g00484 . . . . . . . . Cla07g00729 Cam07g0783 Cec07g0848 Cco07g0819 Clacu07g0766 Cmu07g0773 Cre07g1125 . Cone12ag0269 . Cone9ag0824 . . . Cme07g01600 . . Bda07g00469 . . Bpe11g00646 . Bma12g00058 . . . . Cma16g00570 . . . . . . . . . . . . . . . . . . . Csa04g00624 Chy07g01190 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001461 2 2 1 3 3 3 3 3 3 2 3 3 2 1 2 1 3 3 3 3 3 3 3 2 2 3 3 2 2 1 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla07g00729 Cla_Chr07 FPKM 9.198849 7.414728 7.182136 6.590555 11.584924 9.424485 11.335827 12.485119 10.049072 12.687896