Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00737 ATGGAGCAGAAGGGTTTGTTGCTGTCGGCGTTGAGTGTGGGGGTGGGCGTCGGGGTGGGTCTTGGATTAGCCACCGGACAGAGCGTCAACAAATGGTCTGCCTCTAATTCTTCCTCAAACCTAATCACCGCCGATAAATTAGAACAAGAAATGCTTAAACACATTGTTAATGGCCGTGAAAGCAAAGTCACTTTTGATGAATTCCCTTATTATCTCAGTGAACAGACACGAGTTCTATTGACAAGTGCTGCATATGTGCATTTGAAACATGCTGAAGTCTCTAAGTTCACTCGAAACCTTTCTCCAGCAAGTCGAGCCATCTTACTCTCTGGACCTGCTGAACTCTACCAACAAATGCTTGCCAAGGCATTGGCTCACTATTTTGAAGCCAAACTGTTGCTTTTGGATATTACTGACTTTTCCCTAAAGATTCAGAGCAAATATGGCACTTCAGTCAAGGAATCTGGTTTTAAAAGGTCTACTTCAGAGTCAACACTGGAGAGATTGTCTGGCTTATTTGGATCATTTTCAATCCTTCCACCCAGGGAAGAACAAAAAATAGGTTCATTGCGAAGGCAACATAGTGGTGTGGAACTTGCATCCTGGGGAAAGGAAGGATCTTCCAATCTTCCAAAACTTCGAAGAAATGCCTCTGCTGCGGCTAACATTAATAACCTTGCTTCGCAATGCAATGTCGACAAATCAGCTCCCCTTAAGCACATGAGCAGCTGGGCTTTTGAGGAGAAACTTCTTATACAGTCTCTGTATAAGGTTCTTCTTTATGTGTCGAAAGCAAGTCCCATTGTTTTATATCTTCGTGACGTAGATAGGTTTTTATCCAAGTCAAATAGGGTGTATATCTTGTTCCAGAAAATGCTACAAAAACTGTCTGGGTCAATTTTGATTCTTGGTTCACGTACTATTGATTCGAGCAATGATTATATGGAGGTGGATGAGAGGCTCTCTGCTCTTTTTCCTTATAATATCGAGATCAGGCCACCCGAAGATGAATCTCATCATGTCAGTTGGAAGTCTCAATTGGAAGAGGATATGAAGATGATCAAGGTTCAGGATAACCGAAACCATATCATGGAAGTTCTTTCAGCAAATGATCTTGATTGTGACGATCTCGACTCAATCTGTGTTGCTGACACCTTGGTTCTCAGTAACTACATAGAAGAGATTGTGGTGTCTGCAATTTCTTATCATCTAATGAACAACAAGGATCCGGAATATAGAAACGGAAAACTGATCATTTCGAGCAAGAGTTTGTCCCATGGACTGAACATATTCCAGGCAGGAAAATCCACTGGCAAAAATACTGTACAGCTTGAAGCACAAGCTGAAGCTTCAAAGGACTCGGGAGCAGCAGTGAAATCCGAAGCAAAATCCGATACCACAGCTGCTGAAAACAGAAGTGAAACAGCACCTGCTGCTGCTGTGGCAAAAACTGATGGAGAGACTGCTGCTCCAGCTGCAAAAGCCCCTGAAGTTCCACCAGATAATGAGTTTGAGAAACGTATTAGGCCAGAGGTCATACCGGCGAATGAGATTGGTGTTACATTTTCTGATATTGGTGCCATGGAGGAGATCAAAGATTCTCTTCAGGAACTCGTAATGCTTCCTCTTCGAAGGCCGGATTTATTTCTTGGAGGGCTTTTGAAGCCTTGCAGAGGCATATTGTTGTTTGGACCTCCTGGAACTGGAAAGACTATGTTAGCTAAGGCCATAGCAAAAGAAGCCGGAGCAAGCTTCATTAATGTATCGATGTCTACCATAACTTCTAAATGGTTTGGTGAAGATGAGAAGAATGTTCGGGCTTTATTCACATTGGCAGCCAAAGTCTCTCCCACCATCATATTTGTAGACGAGGTAGATAGTATGCTTGGCCAGCGAACAAGAGTTGGTGAGCATGAGGCGATGAGGAAGATAAAGAATGAGTTCATGACTCACTGGGATGGGCTCTTGACGAAGCCAGGGGAGCGTGTACTCGTTCTTGCAGCAACGAATAGGCCATTTGACCTCGATGAAGCCATCATACGGCGTTTTGAGAGAAGGTATCTAATAATGGTGGGGTTACCAACAGCAGAAAATAGAGAAATGATATTGACAACTCTCTTGGGGAAAGAAAAGGTGGAAGAAGGGCTAGACATGAAGGAGCTGGCTACAATGACAGAAGGATACAGTGGAAGTGATCTCAAGAACTTCTGCATGACGGCTGCGTATCGACCTGTTCGGGAACTAATACAGCAAGAAAGACTAAAGGATATGGTAAGTATGAGGGAATCAGAGAAAAAACGAAGAGCTGCCGAAGGACAGAATAAGGCAGGGGATGGAGCTGGAGAAAGCAAAGAAGAAAGAGTAATCACCCTCAGGGCATTGAATATGGAGGATTTCAAACTAGCAAAGAATCAGGTTGCAGCCAGTTTTGCAGCAGAAGGAGCAATGATGAGTGAATTGAAGCAATGGAATGAGTTATATGGGGAAGGAGGATCTAGAAAGAAGCAACAGTTGACTTATTTCCTGTGA 2529 43.46 MEQKGLLLSALSVGVGVGVGLGLATGQSVNKWSASNSSSNLITADKLEQEMLKHIVNGRESKVTFDEFPYYLSEQTRVLLTSAAYVHLKHAEVSKFTRNLSPASRAILLSGPAELYQQMLAKALAHYFEAKLLLLDITDFSLKIQSKYGTSVKESGFKRSTSESTLERLSGLFGSFSILPPREEQKIGSLRRQHSGVELASWGKEGSSNLPKLRRNASAAANINNLASQCNVDKSAPLKHMSSWAFEEKLLIQSLYKVLLYVSKASPIVLYLRDVDRFLSKSNRVYILFQKMLQKLSGSILILGSRTIDSSNDYMEVDERLSALFPYNIEIRPPEDESHHVSWKSQLEEDMKMIKVQDNRNHIMEVLSANDLDCDDLDSICVADTLVLSNYIEEIVVSAISYHLMNNKDPEYRNGKLIISSKSLSHGLNIFQAGKSTGKNTVQLEAQAEASKDSGAAVKSEAKSDTTAAENRSETAPAAAVAKTDGETAAPAAKAPEVPPDNEFEKRIRPEVIPANEIGVTFSDIGAMEEIKDSLQELVMLPLRRPDLFLGGLLKPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTKPGERVLVLAATNRPFDLDEAIIRRFERRYLIMVGLPTAENREMILTTLLGKEKVEEGLDMKELATMTEGYSGSDLKNFCMTAAYRPVRELIQQERLKDMVSMRESEKKRRAAEGQNKAGDGAGESKEERVITLRALNMEDFKLAKNQVAASFAAEGAMMSELKQWNELYGEGGSRKKQQLTYFL 842
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 20540932 20547204 + ClCG07G007750.2 Cla07g00737 276725

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00737 842 Gene3D - 519 693 IPR027417 -
Cla07g00737 842 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 842 - -
Cla07g00737 842 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 842 - -
Cla07g00737 842 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 349 IPR027417 -
Cla07g00737 842 CDD AAA 526 686 - -
Cla07g00737 842 ProSitePatterns AAA-protein family signature. 663 682 IPR003960 GO:0005524|GO:0016887
Cla07g00737 842 MobiDBLite consensus disorder prediction 757 784 - -
Cla07g00737 842 Pfam ATPase family associated with various cellular activities (AAA) 560 689 IPR003959 GO:0005524|GO:0016887
Cla07g00737 842 SMART AAA_5 556 695 IPR003593 -
Cla07g00737 842 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 520 758 IPR027417 -
Cla07g00737 842 MobiDBLite consensus disorder prediction 447 509 - -
Cla07g00737 842 Gene3D - 694 768 - -
Cla07g00737 842 Pfam AAA+ lid domain 716 757 IPR041569 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00737 - - - csv:101213686 1455.27
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00737 Cla-Chr7:20540932 Cla11g00676 Cla-Chr11:7900753 6.23E-59 dispersed
Cla03g00350 Cla-Chr3:4058352 Cla07g00737 Cla-Chr7:20540932 2.17E-24 transposed
Cla07g01045 Cla-Chr7:26935707 Cla07g00737 Cla-Chr7:20540932 4.14E-06 transposed
Cla09g00428 Cla-Chr9:4077710 Cla07g00737 Cla-Chr7:20540932 2.68E-11 transposed
Cla09g00557 Cla-Chr9:5145467 Cla07g00737 Cla-Chr7:20540932 1.89E-12 transposed
Cla01g02406 Cla-Chr1:37670402 Cla07g00737 Cla-Chr7:20540932 4.83E-54 transposed
Cla01g00082 Cla-Chr1:704442 Cla07g00737 Cla-Chr7:20540932 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g63 Blo02g01127 . . Bda08g00498 Bpe05g00666 . . . . Cmo16g00624 . . . . . Cpe14g00486 Cpe05g00632 . . . . . . . Cla07g00737 Cam07g0790 Cec07g0855 Cco07g0825 Clacu07g0771 Cmu07g0780 Cre07g1131 . . Cone6ag0820 Cone9ag0819 . . . Cme07g01607 . . . . . . Bma05g00841 . . Cmo02g01109 . . Cma16g00575 . . . . . . . . . . . . . . . . . . . Csa04g00619 Chy07g01193 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001190 2 3 2 2 2 2 2 2 2 2 2 2 3 2 2 3 2 5 4 2 3 2 2 2 2 2 2 5 3 4 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla07g00737 Cla_Chr07 FPKM 1.57111 2.151951 2.164823 2.188558 5.873026 4.846521 5.512434 1.539791 1.394034 1.579672