Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00745 ATGTCATCAACTACTTCGGCGAGAACGTATTTCCGATTCAGTCGTCTTCAACCGGCCGCGGCCACCCAGCTCTGGCACTGCGTCGTTCCACATGAAGAGCTCGTTCTGTGGCTCACTCGCTCTGTGTTCTCTTGCGAGTGCAACTACAACGTGATTTTCTTCAACTCACCGAGTCATGAAGTGCCAGAGCGTAGCGTGCATATGGTCCGGCACGCCTCTGTCGCACAGAGTCACCGCCATAGCCGTGCTGAACCAACCTCCGACTCTCTACACCGGCGGATCCGATGGATCAATCATCTGGTGGAAATTATCAATCTCCGATTCCAGCACGCTTATACTGGTCACTCGTGGTTTTATCTTCTGTTCGCCATAATTTATCTCGAAATTGAACCGGTTGCTGTATTGTGTGGCCATGCTACGACAATAGCGGATCTTGGCATTTGTTACCCTGTTATCTCGGGGACGGGTAAGACAGATATTTCAAGTAATGCCGAGGTGAACTCCACTTCAGAAATTTGTGGTGCACTAGTAAGTGCGTGTTCTGATGGTGTGCTGTGCATTTGGAGCAGGAGAAGTGGACATTGCAGGCGCAGAAGAAAACTACCTGCTTGGGTTGGGAGTCCATCCATGGTGCGTACGATTCCATCGAAACCAAGATATGTATGCATTGGATGCTATTTTATTGATGGTGCTCATTCCTATGATAATCACTCAGTTGATTCTGCTGAAAGGATCGAGGTTTCAGCTGATAGAGGATATCAGCATAAAAAGCATTCCAAATGCTCTGTCGTTATTGTTGATACATATACTCTTACCATTGTTGAAACTGTTGTGCATGGAAATTTGTCTATTGGCTCCTTGAGGTATATGGCCATAGTCTCACCTTTAACGGGTGAGGGCAATTATTCAGCAGCTTTAGTTGATTCATTTGGTCGACTGCAGATGATTTCGTTATCTAAGGAGTCTGACCAGGAAGTCGATGAGGCGAGCTTGCACAATTGTTTGCAAGTGGATATTCCTGTTTGGACTGAGGTATTGAATGAGAGAGGCCAGGTTGTGTCAGTTGCGACTCAACACAATGTCATTGCCTTTTTGTTGCCTGATCGTTGTGTGTTCAAGCTTTTACTCAGTGGTCTCGTGGTTGGAGAGGTTTTTTTTGTGGACAGTATTTTTGGCGTTAATGGGTTTACCACTCAAGCTCATGTTTCTGGAGCAATGTTTCTTGATGGTAGAGATGAATTGAATATCATGAATAACCAGGAATGCCATGAAACATTTGTTGAGAAATTTGCTGTGTGGAATTCTGGAGGTCATGCAATTGTCTTCATGATATCAATTACAAATAAGATATTTGAATATAAACCTCTTTATGAAATTCCTGCATCTTGTAATTCCTCACATATGGGATTGTCACTATCGTTCATTCAACTAAATCAACATCTCATCCGCATTGAATCACTTAGCTCTCAAATTGAAGAGCCTTTTCATTGGACTTCTAATATCACAATCTGGTCACTGCAAGAGAAACATCCTCTTCATGGAAAACTGTTGAAATGCAGAATGGTTGGTGAATCTAGTTCATTGACAGAATGGATTCAAGATTCTACTCACCACAGTGAATTTGCAGGGAAATATGGTGTTCCATCTGGATTGAAATCTGATTCTAGTTCTGAAAGTGTAAATGATATATATTTTGGTGACTGTAACAATTTTGTACAGAAGGGAGAAATAATATCTTCTTCTATGGTTATTTCTGATAGTTTATCTACTCCTTATGCAGTGGTTTATGGTTACTCTAGTGGCGATGTACAAATTTTAAAACTAGATTTGTTTCAAGGGTTGTCTTCTCATAGAGGAAGTCCACAATATGAAGCGCATCATCAGGTTCCACAACTATATCTTTCAGGTCACACGGGACCTGTACTATGTTTGGCGGTTCATCGGTTAGTGAGCAAAAGTAATGAACAATTTCTATTATCTGGAAGCATGGATTGCACCATTCGAATTTGGGATCTTGAATCTGGGAATCTTGTCATGGTGATGCACCACCATGTGGCTCCTGTGAGGCAGATAATTCTTCCTCCTGCTCATACCGACCATCCTTGGAGTGATTGTTTTCTTTCAGTTGGTGAGGATTCTTGTGTTGCTCTTGCTTCCTTAGAGACTTTAAAGGTGGAGAGAATGTTTCCTGGACATCGCAACTATCCTGAAAAAGTTGTGTGGGATAGTGTAAGAGGTTATATTGCATGCATGTGCAGTAACCATTCCAGTACTTCTGACACTGTTGATATATTGTATATTTGGGATATTAAGACGGGTGCTCGTGAGCGGATTATTCCTGGGACAGCATCTCAGTCAGTATTCGATAATTTTTGTAAAGGAATTGGCAAGAACTTTTCTGGCCCTATTCTGAATGGAAATACCTCTGCTTCATCTCTACTCTTTACAACAGTCGAAGACGGGAGTCTTTCTGATTCTCTTTCAAGCTATGGTAAGTCCACTGATAAATTAAAGGCAATGGCAGATCTGAGTAATAAGGTAGAATCACATACGTCCAACGGACATGCTAGAAGACGGAAGTCTGCTAAATCATTTCTAAACTCTCTCTTTGATTTTGAGAGTGGAAAGCATCCCATCAAGTGCTCATGTCCATTCCCTGGGATTGCTACAATGAGCTTCGATCTTACAGCATTAATGTCTTTCAATCAGAAGTCTAAGTCATTAGCAACTAGTAGTAATCTTCAAGATACTGCAATTCCTAAGGATCAGCAAGCTAGGATGTCAAGTCCCAGTGCTAGGGATAAGAAGATGGACAATTCTTTGGCCCATGAAATTTCAACCGATTATGGTGAAGAGCTTAACTGGATTAGTGTGTATGAAGAATGTTTAATTCGGTTCAGCTTGTCCTTTTTGCATGTATGGGGTGTTGACAGTGATCTTGACACTTTGCTAGTAACTGACATGAAGTTGAAAAAACCAGAGAGCTTTATGGTGGCTTCTGGTTTGCAGGGGGATAAAGGTTCACTAACAGTGTCATTTCCTGGAATGAAAGCTGTTCTTGAGCTCTGGAAGTCATCTGCAGAATTTTGTGCTATGAGGTCACTCATGATTCTGTCTCTTGCTCAGCACATGATTAGCTTGTTTCACTCAGGTTCATCTGCCAGCAGTGCGCTGGCAGCTTTCTATATGAGGAATTTTGTGGACAAAGTTCCAGATATAAAGCCACCTTTACTTCAGCTTTTAGTGAGCTTCTGGCAAGATGAAAGTGAACATGTACGTATGGCTGCTCGTTCTTTGTTCCATTGTGCAGCTTCACGTGCAATTCCACCAGCACTAAGAGGTGGAAGATCAACCGAGCATGGAAGTTCGAGTGAAATGGGAGATAGTGACACTGAACTCGATGGTTTGAGTATGAATGAGAAGTCTGATTACATGATATCATCAGACTGCATTCCTAAAAGCAAAGAGGTTTCTCAGGTTGAGGAATTCAACATCCGCTCCTGGTTAGAATCTTATGAAATGCACGATTGGATTTCTTGCGTAGGTGGAACGAGCCAAGATGCAATGACTTCTCATATTATAATTGCAGCAGCACTAGCCATTTGGTATCGCAGTCTTGTGAAGAAAAGCCTTCCAATGCTGGTTGTCCATTCATTAGTGAAGTTGGTAAAGTCCATGAACGAGAAATACAGTTCCACTGCTGCAGAGCTACTTGCTGAAGGTATGGAGAGCACATGGAAGACTTGTCTGGGTAATGAAATTCCTCATCTCATTGAAGATGTATTACTCCAGCTGGAATATGTGAGTGGTTCGTCTGCAAATCAGTTAGTTCAAAATTCATCCCTTCCAGTGGGCATTCGCGAAACTTTGGTTGAAGTTCTTCTCCCAAATCTAGCAATGGCCGATGTACCAGGATTCTTGACAGTAATAGAAAGCCAAATTTGGTCTACTGCATCTGATTCACCTGTTCATCTGGTGTCACTTAGGACACTGATCAGGGTTGTGCGTGGTTGTCCTAGAAGCCTGGCACCATATCTGGACAAGGCTGTTAACTTTATTTTGCAAATCATGGACCCCAGCAACTCAGTCATGCGCAAAATTTGTTATCAGAGCTCAATGTCTGCTCTAAAGGAAGTTGTGCATGTGTTTCCAATGGTATCGTTAAATGATTCATGGACCAGATTGGCAGTTGGTGATGTTATTGGAGAGATTAACAGTGCTAGCATTCGTGTATATGATCTACAGAGTGTTACAAAGATTAAGGTTTTGGATGCAACTGGACCTCCTGGACTTCCAAGTTTGCTTCCAGCAGGTTCAGAAATGCCTTTAAGGATCTCAATATCAGCTCTGAGCTTTTCCCCTGATGGCGAGGGGGTTGTTGCCTTTTCTGAACATGGCTTAATGATCCGATGGTGGTCACTGGGATCTGTATGGTGGGAGAAACTAAGCCGCAACTTTGTTCCTGTTCAATGCACAAAAGTGATATTTGTTCCTCCATGGGAAGGATTTTCGCCCAATTCTTCGAGGTTAAGCATTATGGCGAGTGCAACAGAACATCATAGGCAAGCAGATGTGCAGGACAATGTAAGGGGCTTGAGTCATGCAGACTTTTTGAAGATTTTGATTCACAGTCTCGATCTTTCTTATCGGCTAGAATGGACTGATGAGCGAAAAGTAAAACTCACACGACATGGCAATGAGTTGGGAACTTTTCAAATATAA 4722 42.29 MSSTTSARTYFRFSRLQPAAATQLWHCVVPHEELVLWLTRSVFSCECNYNVIFFNSPSHEVPERSVHMVRHASVAQSHRHSRAEPTSDSLHRRIRWINHLVEIINLRFQHAYTGHSWFYLLFAIIYLEIEPVAVLCGHATTIADLGICYPVISGTGKTDISSNAEVNSTSEICGALVSACSDGVLCIWSRRSGHCRRRRKLPAWVGSPSMVRTIPSKPRYVCIGCYFIDGAHSYDNHSVDSAERIEVSADRGYQHKKHSKCSVVIVDTYTLTIVETVVHGNLSIGSLRYMAIVSPLTGEGNYSAALVDSFGRLQMISLSKESDQEVDEASLHNCLQVDIPVWTEVLNERGQVVSVATQHNVIAFLLPDRCVFKLLLSGLVVGEVFFVDSIFGVNGFTTQAHVSGAMFLDGRDELNIMNNQECHETFVEKFAVWNSGGHAIVFMISITNKIFEYKPLYEIPASCNSSHMGLSLSFIQLNQHLIRIESLSSQIEEPFHWTSNITIWSLQEKHPLHGKLLKCRMVGESSSLTEWIQDSTHHSEFAGKYGVPSGLKSDSSSESVNDIYFGDCNNFVQKGEIISSSMVISDSLSTPYAVVYGYSSGDVQILKLDLFQGLSSHRGSPQYEAHHQVPQLYLSGHTGPVLCLAVHRLVSKSNEQFLLSGSMDCTIRIWDLESGNLVMVMHHHVAPVRQIILPPAHTDHPWSDCFLSVGEDSCVALASLETLKVERMFPGHRNYPEKVVWDSVRGYIACMCSNHSSTSDTVDILYIWDIKTGARERIIPGTASQSVFDNFCKGIGKNFSGPILNGNTSASSLLFTTVEDGSLSDSLSSYGKSTDKLKAMADLSNKVESHTSNGHARRRKSAKSFLNSLFDFESGKHPIKCSCPFPGIATMSFDLTALMSFNQKSKSLATSSNLQDTAIPKDQQARMSSPSARDKKMDNSLAHEISTDYGEELNWISVYEECLIRFSLSFLHVWGVDSDLDTLLVTDMKLKKPESFMVASGLQGDKGSLTVSFPGMKAVLELWKSSAEFCAMRSLMILSLAQHMISLFHSGSSASSALAAFYMRNFVDKVPDIKPPLLQLLVSFWQDESEHVRMAARSLFHCAASRAIPPALRGGRSTEHGSSSEMGDSDTELDGLSMNEKSDYMISSDCIPKSKEVSQVEEFNIRSWLESYEMHDWISCVGGTSQDAMTSHIIIAAALAIWYRSLVKKSLPMLVVHSLVKLVKSMNEKYSSTAAELLAEGMESTWKTCLGNEIPHLIEDVLLQLEYVSGSSANQLVQNSSLPVGIRETLVEVLLPNLAMADVPGFLTVIESQIWSTASDSPVHLVSLRTLIRVVRGCPRSLAPYLDKAVNFILQIMDPSNSVMRKICYQSSMSALKEVVHVFPMVSLNDSWTRLAVGDVIGEINSASIRVYDLQSVTKIKVLDATGPPGLPSLLPAGSEMPLRISISALSFSPDGEGVVAFSEHGLMIRWWSLGSVWWEKLSRNFVPVQCTKVIFVPPWEGFSPNSSRLSIMASATEHHRQADVQDNVRGLSHADFLKILIHSLDLSYRLEWTDERKVKLTRHGNELGTFQI 1573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 20764880 20796953 + ClCG07G007830.2 Cla07g00745 276733

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00745 1573 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 634 676 - -
Cla07g00745 1573 MobiDBLite consensus disorder prediction 912 938 - -
Cla07g00745 1573 SUPERFAMILY ARM repeat 1033 1385 IPR016024 -
Cla07g00745 1573 SUPERFAMILY WD40 repeat-like 175 781 IPR036322 GO:0005515
Cla07g00745 1573 ProSitePatterns Trp-Asp (WD) repeats signature. 658 672 IPR019775 -
Cla07g00745 1573 SMART WD40_4 674 719 IPR001680 GO:0005515
Cla07g00745 1573 SMART WD40_4 627 671 IPR001680 GO:0005515
Cla07g00745 1573 SMART WD40_4 128 189 IPR001680 GO:0005515
Cla07g00745 1573 SMART WD40_4 722 769 IPR001680 GO:0005515
Cla07g00745 1573 SMART WD40_4 1439 1473 IPR001680 GO:0005515
Cla07g00745 1573 ProSiteProfiles Trp-Asp (WD) repeats profile. 634 680 IPR001680 GO:0005515
Cla07g00745 1573 PANTHER RABCONNECTIN-3B, ISOFORM A 128 1572 - -
Cla07g00745 1573 PANTHER RABCONNECTIN-3B, ISOFORM A 128 1572 - -
Cla07g00745 1573 MobiDBLite consensus disorder prediction 912 927 - -
Cla07g00745 1573 MobiDBLite consensus disorder prediction 1111 1131 - -
Cla07g00745 1573 Pfam WD domain, G-beta repeat 633 671 IPR001680 GO:0005515
Cla07g00745 1573 Gene3D - 599 880 IPR015943 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00745 K24738 WDR7; rabconnectin-3b - csv:101221785 2591.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00745 Cla-Chr7:20764880 Cla06g00472 Cla-Chr6:5739885 4.22E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g47 . Blo03g00223 Bda06g00120 . . Bpe07g00097 . . . . . . . . . . . . . . . . . . Cla07g00745 Cam07g0798 Cec07g0863 Cco07g0835 Clacu07g0778 Cmu07g0786 Cre07g1139 . . Cone6ag0814 Cone9ag0813 . . . Cme07g01612 . . . . . . . Bma12g00068 . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00613 Chy07g01198 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007130 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 3 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla07g00745 Cla_Chr07 FPKM 15.170579 17.875284 19.45648 19.873558 41.001682 42.683151 42.322117 15.735953 14.483621 14.048768