Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00760 ATGGCGTTGCAAGAACAACTAGATAGGTTTAAGAAACAGCAAGAAAGATGTCAGACTACTTTGTCTGGCATTGCTGCATCCAAGTCTGCGTCCAAGTCTACACCCAAGTTTACGCCTGCACCAGCTGTTTCCATTGCAAGACCTCCGGCTCCTGCTGTAAAATTTTCAAATGATACTGAGAGACTTCAACACATTAACAGCATAAGAAAATCCCCTGTCGGGGCTCAAATCAAGAGGGTTATTGACCTGCTGCTGGAGACAAGGCAAGCCTTTACACCTGAGCAAATCAATGAAGCATGTTATGTTGATATAAATTCCAACAAGGCTGTCTATGATAGTCTGCGGAATAACCCAAAGGTGCACTATGATGGGAGGCGTTTCTCATACAAGTCCAAGCATGACCTGAAGGATAAGAGTCAACTTCTTTACTTGATTCGGAAATTTCCGGAAGGCATTGCTGTCATTGATCTCAAGGATGCTTATCCAAGCGTTATGGAGGACTTGCAAACAAGGCAAGCCTTTACACCTGAGCAAATCAATGAAGCATGTTATGTTGATATAAATTCCAACAAGGCTGTCTATGATAGTCTGCGGAATAACCCAAAGGTGCACTATGATGGGAGGCGTTTCTCATACAAGTCCAAGCATGACCTGAAGGATAAGAGTCAACTTCTTTACTTGATTCGGAAATTTCCGGAAGGCATTGCTGTCATTGATCTCAAGGATGCTTATCCAAGCGTTATGGAGGACTTGCAAGCCCTAAAAGCCTCAGGCCAGGTTTGGCTTCTCTCCAACTTTGATTCACAAGAAGATATTGCATACCCAAATGACCCTCGAATTCAAATCAAGGTAGACGATGATCTGAAGCAACTCTTTCGGGATATTGAATTACCCCGTGACATGCTTGATGTCGAAAAGGATCTACAGAAGAATGGGATGAAGCCTGCAACCAACACAGCAAAGAGGCGAGCCAATGCACAACATGTAGCATCCTCGAAACCAAAGCCAAAGAAAAAGAAGCAAGAGATCAGCAAGAGAACTAAGCTCACCAATGCACATCTTCCCGAGCTCTTCAAAAACTAG 1083 43.67 MALQEQLDRFKKQQERCQTTLSGIAASKSASKSTPKFTPAPAVSIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQTRQAFTPEQINEACYVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQLFRDIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 21345886 21354979 + ClCG07G007970.1 Cla07g00760 276748

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00760 360 MobiDBLite consensus disorder prediction 312 326 - -
Cla07g00760 360 Pfam TFA2 Winged helix domain 2 219 276 IPR040501 -
Cla07g00760 360 Pfam TFA2 Winged helix domain 2 136 169 IPR040501 -
Cla07g00760 360 PANTHER BNAA02G21830D PROTEIN 1 169 - -
Cla07g00760 360 PANTHER TRANSCRIPTION INITIATION FACTOR IIE, BETA SUBUNIT 1 169 IPR016656 GO:0005673|GO:0006367
Cla07g00760 360 PANTHER BNAA02G21830D PROTEIN 170 360 - -
Cla07g00760 360 MobiDBLite consensus disorder prediction 309 360 - -
Cla07g00760 360 PANTHER TRANSCRIPTION INITIATION FACTOR IIE, BETA SUBUNIT 170 360 IPR016656 GO:0005673|GO:0006367
Cla07g00760 360 Pfam TFIIE beta subunit core domain 75 134 IPR003166 GO:0006367
Cla07g00760 360 Pfam TFIIE beta subunit core domain 172 217 IPR003166 GO:0006367
Cla07g00760 360 ProSiteProfiles TFIIE beta central core DNA-binding domain profile. 61 136 IPR003166 GO:0006367
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00760 K03137 TFIIE2, GTF2E2, TFA2; transcription initiation factor TFIIE subunit beta - csv:101211845 376.326
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g357 . . . . . . . . . Cmo16g00635 . . . . . Cpe14g00496 . . . . . . . . Cla07g00760 Cam07g0816 Cec07g0876 Cco07g0851 Clacu07g0794 Cmu07g0802 Cre07g1156 . . . . . . . . . . . . . . . . . . . . Cma16g00586 . . . . . . . . . . . . . . . . . . . . Chy07g01207 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006900 3 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla07g00760 Cla_Chr07 FPKM 0.440591 0.289155 0.0 0.0 24.204447 21.511522 21.434864 0.0 0.0 0.0