Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00765 ATGGGTTATTTTGCTTCCGTCCAGATTTTCTGTCTGATCTCTGTAGCTCTGATTGTGACCAGTGATTCCTTCGCGCCGGATGAAGAAGGGCAAATTCAAGAGATAATTGGCTTCATAAAGACAGTCGGTTCAGAAATGTGGGATCCGGATCTTGATCAAATCATGCTTCTGTTTCTGCTTTTATATCAAAGTTTACTATACTTGTTTAATTATGTTTCTATATCTGGCTCAAGTTATATCAATTTGCTGAGCAGAAAGAAAAAGAAGAAGCTCTTAGAATTACATTTGCCTGTGACTGGAATGTTCTTGGTTTTCTACTTTTCTCTAGCATCGGCTCTTAAAACCTTCAAAGATCAAATATATGAAGACCCAAAGCGAATTTTTTCAAATTGGGATTTAGAAGTTGAAAAAAATCCCTGTAACTGGTCTGGCATTGCCTGTTCTCCAGATGGAGGCCATGTTATAAAGCTTGACATTTCTAGGGCGTCACTGAAAGGATTTTTAGCACCAAGCTTGGGTCAACTGAGCTTCCTGCAAGAACTGTATCTTCATGACAACAATCTGCTTGGAACAATACCCAAGGAGCTGGGGTTATTAAAGAAACTTAAGGTCCTTGATTTGGGGACGAATCGACTCTCTGGCCCAATCCCTCCAGAGATTGGGGGTTTAACAGATATTCTGAAAATCAACTTTGAATCAAACGGATTGACCGGGAGGCTACCCCCTGAGCTGGGGAATTTGAGATACCTCAGAGAACTTAGGTTAGATAGGAATAAACTTCAAGGATCTATTCCAGATGGTGACACTTCAAAGTATACATCCAATATGCATAGAATGTATGCTTCAAATGCATCTGGATTCTGTCACTTAAATGACCTCAGGTTTGCAGATTTTTCATACAATTTCTTTGTTGGGAAAATACCCAAGTGTTTGGAGGACCATCTTCCAAGGTCAAGTTTTCAAGGGAACTGTCTCCAATACAATTATCCTAAACAGCGTACTGCAGCTCAATGTGGTGGTGCTGCTCCTCTTGCTGAATCACATCCAGGAGGCATCTCGAAGCATGTACCTGTTCAACATGCTTCCAAACACCAAAGAGCTTCAAAACCTGCCTGGCTTCTAACCCTTGAAATCATCACTGGAATTACCACAGGTTCTTTGTTTATAATTGCTGTGATCACTTCTCTTCGGAGATGCAATGGCAAATCCTCGATCATAATCCCGTGGAAGAAATCCTCAAGCGGGAAGGACCATGTTAGCCTTTACATCGACACTGAGATGTTGAAAGATGTGCCAAGCATCAGCAGGCAAGAGCTTGAAGTAGCCTGTGAAGATTTCAGTAATATTATTGGCTCCTCACCGGACAGCCTAGTGTACAAGGGCACCATGAAAGGTGGACCTGAGATTGCTGTTATCTCAATATGCATTAAAGAAGAAAACTGGACAGATTATCTCGAGCTTTATTTTCAGCGAGAGGTGGCAGATCTAGCAAGACTAAATCATGAGAATGTAGGAAAGTTGCTAGGCTATTGCAAAGAAAGCAGTCCATTTACAAGGATGCTGGTTTTTGAATATGCATCAAATGGCACGTTATATGAGCACCTTCATTATGGAGAAGGTTCTTTATCTTGGACACGACGAATGAATATTATTTTGGGCATGGCCCGTGGACTTAAGTATCTTCATAGTGAAGTCCAACCACCATTTACTATATCAGAGTTAAATTCTGGTGCTGTATATCTTACAGATGATTTCTCACCCAAGCTGGTTGACTTTGAAAGCTGGAAGACCATTCTTTCAAGGTCAGAAAAGAACTCAGGCTCCATTGGAAACCAAGTCAATCAATGTATTCTTCCAAATTCGCTCGAACCACGTCATCTCGACATAGAAAGTAACATCTATGCATTTGGTGTTCTTTTACTGGAAGTAGTCAGTGGGAGACCTCCATACTGTAAGGACAAAGAATGCTTGGTAGACTGGGCCAAGGAATACCTCGAATCGCCAGATGGGATGTTTTGCTTGGTAGACCCAGAAGTGAAGCATTTTGCAGATGAAGATCTGAGGACAATATGCGAGGTGGTAAATCTTTGTATTCATCCACAGCCCACGAAGCTGATTTGTATGCAGGACTTATGCATCATGTTAGAGACCAGAATTGATACCTCAGTCTCTGTTGAGTTGAAGGCATCTTCACTTGCTTGGGCTGAACTTGCACTTTCTTCATAG 2226 41.46 MGYFASVQIFCLISVALIVTSDSFAPDEEGQIQEIIGFIKTVGSEMWDPDLDQIMLLFLLLYQSLLYLFNYVSISGSSYINLLSRKKKKKLLELHLPVTGMFLVFYFSLASALKTFKDQIYEDPKRIFSNWDLEVEKNPCNWSGIACSPDGGHVIKLDISRASLKGFLAPSLGQLSFLQELYLHDNNLLGTIPKELGLLKKLKVLDLGTNRLSGPIPPEIGGLTDILKINFESNGLTGRLPPELGNLRYLRELRLDRNKLQGSIPDGDTSKYTSNMHRMYASNASGFCHLNDLRFADFSYNFFVGKIPKCLEDHLPRSSFQGNCLQYNYPKQRTAAQCGGAAPLAESHPGGISKHVPVQHASKHQRASKPAWLLTLEIITGITTGSLFIIAVITSLRRCNGKSSIIIPWKKSSSGKDHVSLYIDTEMLKDVPSISRQELEVACEDFSNIIGSSPDSLVYKGTMKGGPEIAVISICIKEENWTDYLELYFQREVADLARLNHENVGKLLGYCKESSPFTRMLVFEYASNGTLYEHLHYGEGSLSWTRRMNIILGMARGLKYLHSEVQPPFTISELNSGAVYLTDDFSPKLVDFESWKTILSRSEKNSGSIGNQVNQCILPNSLEPRHLDIESNIYAFGVLLLEVVSGRPPYCKDKECLVDWAKEYLESPDGMFCLVDPEVKHFADEDLRTICEVVNLCIHPQPTKLICMQDLCIMLETRIDTSVSVELKASSLAWAELALSS 741
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 21437950 21443446 + ClCG07G008030.2 Cla07g00765 276753

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00765 741 Gene3D Ribonuclease Inhibitor 223 354 IPR032675 -
Cla07g00765 741 Pfam Leucine rich repeat N-terminal domain 111 148 IPR013210 -
Cla07g00765 741 ProSiteProfiles Protein kinase domain profile. 444 723 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla07g00765 741 PANTHER PROTEIN MALE DISCOVERER 2 98 741 - -
Cla07g00765 741 Gene3D Ribonuclease Inhibitor 109 222 IPR032675 -
Cla07g00765 741 SUPERFAMILY Protein kinase-like (PK-like) 420 716 IPR011009 -
Cla07g00765 741 SUPERFAMILY L domain-like 110 312 - -
Cla07g00765 741 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 98 741 - -
Cla07g00765 741 Gene3D Transferase(Phosphotransferase) domain 1 526 731 - -
Cla07g00765 741 Gene3D Phosphorylase Kinase; domain 1 421 525 - -
Cla07g00765 741 Pfam Protein tyrosine and serine/threonine kinase 448 652 IPR001245 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00765 - - - csv:101211360 1171.76
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla01g00277 Cla07g00765 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00277 Cla-Chr1:2907211 Cla07g00765 Cla-Chr7:21437950 0 dispersed
Cla03g00716 Cla-Chr3:8643344 Cla07g00765 Cla-Chr7:21437950 6.76E-101 dispersed
Cla07g00418 Cla-Chr7:5524777 Cla07g00765 Cla-Chr7:21437950 7.99E-86 dispersed
Cla07g00765 Cla-Chr7:21437950 Cla07g01072 Cla-Chr7:27323834 1.21E-57 dispersed
Cla07g00765 Cla-Chr7:21437950 Cla02g01892 Cla-Chr2:34112772 1.78E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g341 . . Bda06g00084 . . Bpe07g00114 . . . Cmo16g01091 Cma02g01466 Cma15g01218 Car02g01230 Car15g01098 . Cpe14g00501 Cpe05g00322 . . . . . . . Cla07g00765 . . . . . . Cone8ag0315 . . Cone9ag0768 . Csa05g00296 Chy09g01210 Cme07g01624 . . . . . . . . . Cmo02g01503 Cmo15g01283 . Cma16g00589 . . . Cpe13g00162 Bhi12g00234 . . . . . . Cla01g00277 . . . . . . Lsi09g00275 Csa04g00601 Chy07g01211 Cme09g01747
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001701 1 3 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 3 3 1 70
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80683 PF07714 PK_Tyr_Ser-Thr 9.40E-20 CL0016 Cla PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla07g00765 Cla_Chr07 FPKM 3.718386 3.373612 7.74063 7.589666 24.450825 19.049732 23.371027 7.709362 8.328972 8.952965