Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00768 ATGGATAGTGGCAGAAACGTAATAAGATGTAAAGAAGGAGAGCAAATAGAGAAGAAAGAAACCGAGAAGAAACGAGAAGGTGACCGACACGCGGCCTTCCAGCCGGTTGCTCTGGTCGGCGTGCGCGATCAGTCTCCTCACGAAGATGGCCACCGTGTTAAGTTGTGTTATGTTGTTCTTTTCCCTTTCTGTCAAAAAGGACAGTTTGGGGATCTGAGGAAGATGGTTCAATCGATTGCTGCAGCTTCTCTTTTTGGCCATCAGCTGCTATGTGGAGGAACTTTTGTTAAGGACACGTCCTACAAGAGGAAGAATAGCTGGTTCCCAACATCCAAATTTGTTGGTAAGAGGCTGATTTCGTCTCCCCCAACTTCTGGATTGAAAGTGGATCGATCAGCACTTTTGGCAATTAAGGCTTTATCACTGGAGGTGACAAAAGAGGCGTATTCATTCAGAGAGGATAGAATACCGAAGGATTGGAACTATGATATTGATGCTGGCTTTGATCGAAAGCCAGGTTTATGGCCTCCTGAAAACAAAGCAGATAATCCTTCATTACAGAATCCATTGCTTCGACAAGAAAGAATGGGGTGTGGTTGGTTGGGTGCCATATTTGAGTGGGAGGGTGTGTTGATTGAGGACAATCCTGAAATTGAAAAGCAGGCCTGGTTAGCTCTTTCTCAGGAAGAAGGAAAATCCCCTCCCCCAGCTTTTATCCTCAGAAGAATAGAGGGGATGAAGAATGAACAGGCAATTTCTGAAGTCCTTTGCTGGTCAAGAGATCCTGCTCAGTTGAGAAGAATGGCTGCTAGGAAGGAGGAAATCTATCAGGCATTGCAGGGGGGAGTTTACAGACTAAGAGCAGGGTCAAAAGAGTTTGTGAATATCCTGATGCATTACAAGATTCCCATGGCACTGGTTTCAACCCGTCCTAGAGAAACTCTGGAGTCGGCCATGGGAAAGATTGGTATTGATGGCGATTTCAATGTGATTATAGCTGCGGAGGATGTTCACAGGGGAAAGCCTGATCCAGAAATGTTCGACTATGCAGCACAGCTTTTGAACTTCATTCCTGAAAGGTGCATTGTGTTTGGGAATTCAAACCAAACTGTTGAAGCTGCTCATGATGCTCGGATGAAGTGTGTGGCAGTTGCAAGCAAGCATCCTGTTTATGAACTTGGGGCTGCGGACTTGGTGGTGAGGCGTCTTGATGAGCTGACAGTCGTCGATTTGAAGAATCTCGCCGATATTGAGTCCTCTGAATTTGGGTCTGGAGAGCCAGAGTTGGAGATGGAGGAAGATGATGAGTCTCCATCAACCATGACAGCAGTTGATGATATTTTCTGGTGA 1350 45.93 MDSGRNVIRCKEGEQIEKKETEKKREGDRHAAFQPVALVGVRDQSPHEDGHRVKLCYVVLFPFCQKGQFGDLRKMVQSIAAASLFGHQLLCGGTFVKDTSYKRKNSWFPTSKFVGKRLISSPPTSGLKVDRSALLAIKALSLEVTKEAYSFREDRIPKDWNYDIDAGFDRKPGLWPPENKADNPSLQNPLLRQERMGCGWLGAIFEWEGVLIEDNPEIEKQAWLALSQEEGKSPPPAFILRRIEGMKNEQAISEVLCWSRDPAQLRRMAARKEEIYQALQGGVYRLRAGSKEFVNILMHYKIPMALVSTRPRETLESAMGKIGIDGDFNVIIAAEDVHRGKPDPEMFDYAAQLLNFIPERCIVFGNSNQTVEAAHDARMKCVAVASKHPVYELGAADLVVRRLDELTVVDLKNLADIESSEFGSGEPELEMEEDDESPSTMTAVDDIFW 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 21476911 21479040 - ClCG07G008060.2 Cla07g00768 276756

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00768 449 CDD HAD_BPGM-like 263 386 - -
Cla07g00768 449 MobiDBLite consensus disorder prediction 421 445 - -
Cla07g00768 449 Pfam Haloacid dehalogenase-like hydrolase 217 384 IPR041492 -
Cla07g00768 449 Gene3D - 203 401 IPR023214 -
Cla07g00768 449 PANTHER BETA-PHOSPHOGLUCOMUTASE-LIKE ISOFORM X1 75 449 - -
Cla07g00768 449 SUPERFAMILY HAD-like 203 406 IPR036412 -
Cla07g00768 449 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 319 384 IPR006439 -
Cla07g00768 449 MobiDBLite consensus disorder prediction 423 440 - -
Cla07g00768 449 Gene3D Putative phosphatase; domain 2 213 286 IPR023198 -
Cla07g00768 449 PANTHER 5-AMINO-6-(5-PHOSPHO-D-RIBITYLAMINO)URACIL PHOSPHATASE, CHLOROPLASTIC 75 449 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00768 K22912 PYRP2; 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.104] - csv:101210862 707.983
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00462 Cla-Chr7:6329232 Cla07g00768 Cla-Chr7:21476911 9.39E-20 dispersed
Cla07g00768 Cla-Chr7:21476911 Cla03g01695 Cla-Chr3:32861915 8.79E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g323 . . Bda06g00102 . . Bpe07g00109 . . . Cmo16g00641 . . . . . Cpe14g00503 . . . . . . . . Cla07g00768 Cam07g0825 Cec07g0883 Cco07g0860 Clacu07g0804 Cmu07g0809 Cre07g1163 . . Cone6ag0778 Cone9ag0783 . . . Cme07g01627 . . . . . . . Bma12g00076 . . . . Cma16g00591 . . . . . . . . . . . . . . . . . . . . Chy07g01214 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007776 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla07g00768 Cla_Chr07 FPKM 5.28615 6.063483 5.04373 5.149868 4.386785 4.107849 4.943206 6.759435 6.779662 8.965055