Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00772 ATGTGGATTTTTGGATGGAAAGGACCATCTGGGTTCTCAGCCCGTTCTACAGCAGAAGAAGTCACTGAAGGAATTGATGGCAGTGGCCTCACTGCTATTGTTACAGGAGCTTCAAGTGGTCTTGGTGAAGAGGCCACACGTGTTCTTGCATTACGAGGAGTCTATGTCATTATGGCTGTAAGGAATGTTGAAGCAGGAAGAAAAGTAAAAGAAGCAATATTGAAGCAATCCCCCTCGGCTAAAATTGATGTCATGGAGTTAGATCTTAGTTCGATGGAATCTGTAAGGAAGTTTGCATCAGATTATATTGCATCAGACCGTGCACTAAATATTCTCATGAACAATGCCGGCGTTATGGCTACTCCTTTTATGCTTTCCCATGATGGCATAGAATTGCAGTTTGCAACAAATCATTTAGGACATTTTCTTCTGACGAACCTTCTGATGGAAACCATGAAAAAAACTGTGCTTGAAAGCAAAAAGGAGGGAAGGATTGTCAATCTATCATCAGAGGGTCACCGGTTGACATATGGTGAAGGAATTCGTTTTGATAAAATCAATGATGAATCAGAGTATAGAACTCTCTTAGCTTATGGACAATCAAAGCTTTCCAACATACTGCATGCAAAAGAGCTTGCCAGGCGGTTAAAGGAAGAAGGGGTAGAAATAACAGCCAACGCTCTTCATCCTGGAGCAATTGCTACCAATCTGCTACGCTTCCATGGTTTCATTAACGTTGTTGCTAGTTCGGTTGCTAAATTTGTGCTTAAAAGTGTCCAGCAGGGAGCAGCAACTCAGTGTTATGTAGCACTGAATCCCCAAGTCAAAGGGGTAAGTGGAGAGTATTTTGTTGATAGTAATATAGCCAACCCAACCAATCATGCCAAAGATGTGGAATTGGCCAAGAAACTATGGGATTTCAGTGTGGATCTAACCAGCCCAAAATAA 948 41.88 MWIFGWKGPSGFSARSTAEEVTEGIDGSGLTAIVTGASSGLGEEATRVLALRGVYVIMAVRNVEAGRKVKEAILKQSPSAKIDVMELDLSSMESVRKFASDYIASDRALNILMNNAGVMATPFMLSHDGIELQFATNHLGHFLLTNLLMETMKKTVLESKKEGRIVNLSSEGHRLTYGEGIRFDKINDESEYRTLLAYGQSKLSNILHAKELARRLKEEGVEITANALHPGAIATNLLRFHGFINVVASSVAKFVLKSVQQGAATQCYVALNPQVKGVSGEYFVDSNIANPTNHAKDVELAKKLWDFSVDLTSPK 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 21591133 21604465 + ClCG07G008100.1 Cla07g00772 276760

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00772 315 Gene3D - 23 314 - -
Cla07g00772 315 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 107 118 IPR002347 -
Cla07g00772 315 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 171 IPR002347 -
Cla07g00772 315 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 198 217 IPR002347 -
Cla07g00772 315 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Cla07g00772 315 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Cla07g00772 315 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Cla07g00772 315 PRINTS Glucose/ribitol dehydrogenase family signature 198 217 IPR002347 -
Cla07g00772 315 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
Cla07g00772 315 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 2 312 - -
Cla07g00772 315 PANTHER RETINOL DEHYDROGENASE 2 312 - -
Cla07g00772 315 CDD retinol-DH_like_SDR_c_like 29 305 - -
Cla07g00772 315 Pfam short chain dehydrogenase 31 172 IPR002347 -
Cla07g00772 315 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 289 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00772 - - K19329 csv:101210378 572.778
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla01g00106 Cla07g00772 CCT
Cla01g00106 Cla07g00772 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00772 Cla-Chr7:21591133 Cla10g00091 Cla-Chr10:941197 2.74E-40 dispersed
Cla01g00712 Cla-Chr1:8317951 Cla07g00772 Cla-Chr7:21591133 3.61E-18 transposed
Cla03g01363 Cla-Chr3:29094878 Cla07g00772 Cla-Chr7:21591133 1.15E-09 transposed
Cla04g01229 Cla-Chr4:27394404 Cla07g00772 Cla-Chr7:21591133 2.67E-28 transposed
Cla10g01994 Cla-Chr10:35760210 Cla07g00772 Cla-Chr7:21591133 1.60E-135 transposed
Cla09g00956 Cla-Chr9:10049976 Cla07g00772 Cla-Chr7:21591133 1.23E-11 transposed
Cla01g00106 Cla-Chr1:925278 Cla07g00772 Cla-Chr7:21591133 8.30E-147 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g310 Blo02g01124 Blo03g00227 . Bda08g00502 Bpe05g00662 . . . . Cmo16g00644 . Cma15g01280 . Car15g01154 . Cpe14g00505 . . . . . . . . Cla07g00772 Cam07g0831 Cec07g0886 Cco07g0863 Clacu07g0808 Cmu07g0814 Cre07g1168 Cone8ag0615 . . Cone9ag0789 . Csa05g00120 Chy09g01373 Cme07g01630 . . . . . . Bma05g00836 . . . . . . . . . . Bhi12g00031 . . Lac11g0044 . . Lcy12g0041 Cla01g00106 Cam01g0105 Cec01g0106 Cco01g0107 Clacu01g0103 Cmu01g0104 Cre09g2402 Lsi09g00092 Csa04g00593 . Cme09g01920
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000397 4 5 3 4 3 4 5 4 3 4 3 3 5 4 4 6 3 6 5 4 4 4 4 4 5 4 4 5 5 5 126
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla07g00772 Cla_Chr07 FPKM 1.401013 1.256413 4.572679 5.294509 0.917809 0.921133 1.305399 2.865999 2.446312 2.887454