Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00774 ATGAGACGACGTACGGATGCTGATGATTTGAGGCCTGTTAACAATACTTTCCAAACCATTACTGCCGCCGCTGATGCGATCGCCACTGTTGATCATCGTTTTCCTCGGGCTACTGCCGTCCAGAAAAGAAGATGGGGCAGTTGTTGGAGTATTTATTGGTGCTTTGGATCCCTCAAACAGAGGAAAAGAATTGGGCACGCTGTTTTGGTACCAGAATCAAGTCCATCTGAGCCTCATGAAAATACATTGCAATCACCAGATATTGTGCTTCCTTTTGCTGCACCTCCCTCTTCCCCTGCATCCTTCCTTCAATCTGACCCACCTTCTGCTACACAGTCACCTACACCTTTAATTTCTTTCTCTTCTCTCACTTCTAACATGTATTCTCCTGATGGGCCTTCCTCCATTTTTGCCATTGGCCCATTTGCTCATGAAACACAACTAGTTTCTCCACCTCTCAATTTCTCTACTCTCACGACTGAACCATCAACTGCTCCCTTCACTCCTCCTGAGTCTATTCACTTGACTACCCCTTCTTCCCCTGAAGTTCCTTTTGCTCAGTTTCTTCAACCTACCCTCCACAAACCTGAGTCTGATCATCAATATCCATTTCCTAATGATGACTTCCAATCTTACCAATTCTATCCAGGCAGTCCGGTTAGTCACCTCATATCACCACGGTCCGTTATTTCTCGTTCTGGGGCTTCGTCGCCTTTGCCTGACTATGATTTTGCTTCCTTTGGTTCTCAATTTTTGAATTTCCCATTAGAAGTTCCACCTACTTTGTTGAATCTTGACAAGCATTCCATTCATAACTGGCCACAACGCCAGAGTACTGATTCTTGCACTCAAGATTCTATAGAATTCAAATCAAGTAATGATTTTGTTTTGAATCCCCAAACTTCAGAATCTATGTCAGATCACCACGCAACAAATAAATCTCAAAATATTCAAATTCTCATTGATGGAAGCCAAACGGAGGAGGAGCCAGCTGCTACTAATCATAGATTCTCATTTGAATTATCTGATGGAGATGTTCTATTACAAAGCGTAGGAAGTAAGCCACTGGAATCAAATGAACTTACTGTTGCATCGTCTCCAATACATGAACCATCTGAAACGGCTAAAGAAAATTCTCCTATTGGTGACCATACTTCAAATGTTACAGGAGAAAAGACAAAAGCAGACGGTGAAGAAGCACATCAGCATCAAGAACATCATTCCATTACTCTTGGATCTGTGAAGGAATTCAATTTTGATAATGGCAATGGAAGTGATACACATAAGCCAAATATAAATTCAGAATGGTGGACTAATGCAAAGGATGTTGACACAGAAGGCACGACCACGAGGGCCTGGTCATTCTTTCCAATGGCGCAGCAAAGATGA 1389 42.48 MRRRTDADDLRPVNNTFQTITAAADAIATVDHRFPRATAVQKRRWGSCWSIYWCFGSLKQRKRIGHAVLVPESSPSEPHENTLQSPDIVLPFAAPPSSPASFLQSDPPSATQSPTPLISFSSLTSNMYSPDGPSSIFAIGPFAHETQLVSPPLNFSTLTTEPSTAPFTPPESIHLTTPSSPEVPFAQFLQPTLHKPESDHQYPFPNDDFQSYQFYPGSPVSHLISPRSVISRSGASSPLPDYDFASFGSQFLNFPLEVPPTLLNLDKHSIHNWPQRQSTDSCTQDSIEFKSSNDFVLNPQTSESMSDHHATNKSQNIQILIDGSQTEEEPAATNHRFSFELSDGDVLLQSVGSKPLESNELTVASSPIHEPSETAKENSPIGDHTSNVTGEKTKADGEEAHQHQEHHSITLGSVKEFNFDNGNGSDTHKPNINSEWWTNAKDVDTEGTTTRAWSFFPMAQQR 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 21604934 21607548 - ClCG07G008110.1 Cla07g00774 276762

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00774 462 MobiDBLite consensus disorder prediction 97 116 - -
Cla07g00774 462 MobiDBLite consensus disorder prediction 389 409 - -
Cla07g00774 462 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN-LIKE 8 460 IPR040420 -
Cla07g00774 462 MobiDBLite consensus disorder prediction 98 116 - -
Cla07g00774 462 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 8 460 - -
Cla07g00774 462 MobiDBLite consensus disorder prediction 362 388 - -
Cla07g00774 462 MobiDBLite consensus disorder prediction 362 409 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00774 - - - csv:101220378 827.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00896 Cla-Chr5:8874244 Cla07g00774 Cla-Chr7:21604934 4.93E-99 dispersed
Cla07g00774 Cla-Chr7:21604934 Cla11g01866 Cla-Chr11:32188724 1.46E-44 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g303 . . . . . . . . . Cmo16g00645 . . . . . . . . . . . . . . Cla07g00774 Cam07g0832 Cec07g0887 Cco07g0864 Clacu07g0809 Cmu07g0815 Cre07g1169 Cone8ag0293 Cone12ag0299 . . . . . Cme07g01631 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy07g01217 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010049 0 2 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 0 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla07g00774 Cla_Chr07 FPKM 5.371521 6.14463 7.175239 7.524938 23.726082 26.587519 24.486353 1.927295 2.336184 2.261621