Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00776 ATGGATGACTTTGGTTCATCTTCTAGATTTCATCATCATCAGTACTACAACTTTGAAAGCAGCAGCAGCAGCAACAACAACAATAACAACAGAAGAAGCAGAGATTTTGATGATGATGAACAACAACAACAACAAGATCAAGAAATGGAAGAATGTGGTAACAACAACAACGACAACAACAACAATAATAATTGTTGTGTTTTTGTAGAGAAAGAGCACATGTTTGACAAGGTTGTAACTCCAAGCGATGTGGGAAAATTAAACCGTTTAGTTATCCCAAAACAACACGCTGAAAAATACTTCCCACTTGATGCTTCATCCAACGAAAAAGGTCTTCTCTTAAACTTTGAAGACCGCTGTGGTAAGCTTTGGCGCTTCCGTTACTCTTACTGGACCAGCAGCCAAAGCTATGTGATGACCAAAGGCTGGAGCCGCTTTGTCAAAGACAAAAGACTCGATGCTGGTGATATTGTCTCTTTTCAAAGACCTCTACATCATGCTAAAGATCGTTTTTTTATAGATTGGCGACGCCGTCCACCGCATCCCACCGTCGACATGCCTTTTCCTTTCAACCGCGGTGGCCAATTTCCTCCTCATCACCATTTTCAGCTTCACGGCCAGTGGAATAATAATCCAGTGGCCACACCCTTATCTTTACACAGGGACCACGTCCTCCACTTGCCGCACAATAATAATGTCAGTTTATTTCATAATACCTATAATCATCATCATCATAATCATAATCGTCATCCTGTTCTTGACGGCTCGTCCTACGGTGGGGCATCGGCTTTTTACCATTTGAGATCCCCCTCCACAGCGCCGCAGATAGGGGCAGTGCCGGTTGTAGCAGATGGAAAGGGTGGTGGTAGCAGTGGTGGTGGTGGGAAAACGGCTGCGGCTAAGACGACATTGAGGCTTTTTGGTGTCAACATGGAATGTGCAGTATCTGAAGAGTCTGGTGATGATGAGTGTGACATAGGAACAACTTCGACGACGACAATGTTGTCGTCGTCTCAATTTCATGTTTATAATGGGATGCCGATGCCGATGCCGATGCTGATGCCGATGTCGATGCAGATGCCAATAAATAATAACAACGTATCAACCATGGATCATCGATGTCGTCGGTCTTTTTGGATTAAACTTCAGCAACAAGAGTCCATAGAGCATGTGGTGATTGCTGTCTCTAATTCCTTGGACAAATTGCAAAGTCCATGCAGGTTTTGA 1227 43.93 MDDFGSSSRFHHHQYYNFESSSSSNNNNNNRRSRDFDDDEQQQQQDQEMEECGNNNNDNNNNNNCCVFVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDASSNEKGLLLNFEDRCGKLWRFRYSYWTSSQSYVMTKGWSRFVKDKRLDAGDIVSFQRPLHHAKDRFFIDWRRRPPHPTVDMPFPFNRGGQFPPHHHFQLHGQWNNNPVATPLSLHRDHVLHLPHNNNVSLFHNTYNHHHHNHNRHPVLDGSSYGGASAFYHLRSPSTAPQIGAVPVVADGKGGGSSGGGGKTAAAKTTLRLFGVNMECAVSEESGDDECDIGTTSTTTMLSSSQFHVYNGMPMPMPMLMPMSMQMPINNNNVSTMDHRCRRSFWIKLQQQESIEHVVIAVSNSLDKLQSPCRF 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 21656637 21658361 - ClCG07G008140.2 Cla07g00776 276764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00776 408 CDD B3_DNA 73 162 IPR003340 GO:0003677
Cla07g00776 408 SUPERFAMILY DNA-binding pseudobarrel domain 72 177 IPR015300 -
Cla07g00776 408 ProSiteProfiles B3 DNA-binding domain profile. 75 179 IPR003340 GO:0003677
Cla07g00776 408 SMART B3_2 75 179 IPR003340 GO:0003677
Cla07g00776 408 MobiDBLite consensus disorder prediction 15 56 - -
Cla07g00776 408 Gene3D - 68 183 IPR015300 -
Cla07g00776 408 Pfam B3 DNA binding domain 75 178 IPR003340 GO:0003677
Cla07g00776 408 MobiDBLite consensus disorder prediction 15 30 - -
Cla07g00776 408 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 25 338 IPR044800 GO:0003700
Cla07g00776 408 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 25 338 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00776 Cla-Chr7:21656637 Cla01g02224 Cla-Chr1:36179396 2.95E-13 dispersed
Cla03g01321 Cla-Chr3:28238405 Cla07g00776 Cla-Chr7:21656637 9.33E-26 transposed
Cla06g00220 Cla-Chr6:2625118 Cla07g00776 Cla-Chr7:21656637 1.03E-63 transposed
Cla10g01776 Cla-Chr10:33700239 Cla07g00776 Cla-Chr7:21656637 8.06E-47 transposed
Cla01g00124 Cla-Chr1:1170541 Cla07g00776 Cla-Chr7:21656637 2.24E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61407 PF02362 B3 1.60E-27 CL0405 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00776 - - bhj:120090999 519.62