Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00776 ATGGATGACTTTGGTTCATCTTCTAGATTTCATCATCATCAGTACTACAACTTTGAAAGCAGCAGCAGCAGCAACAACAACAATAACAACAGAAGAAGCAGAGATTTTGATGATGATGAACAACAACAACAACAAGATCAAGAAATGGAAGAATGTGGTAACAACAACAACGACAACAACAACAATAATAATTGTTGTGTTTTTGTAGAGAAAGAGCACATGTTTGACAAGGTTGTAACTCCAAGCGATGTGGGAAAATTAAACCGTTTAGTTATCCCAAAACAACACGCTGAAAAATACTTCCCACTTGATGCTTCATCCAACGAAAAAGGTCTTCTCTTAAACTTTGAAGACCGCTGTGGTAAGCTTTGGCGCTTCCGTTACTCTTACTGGACCAGCAGCCAAAGCTATGTGATGACCAAAGGCTGGAGCCGCTTTGTCAAAGACAAAAGACTCGATGCTGGTGATATTGTCTCTTTTCAAAGACCTCTACATCATGCTAAAGATCGTTTTTTTATAGATTGGCGACGCCGTCCACCGCATCCCACCGTCGACATGCCTTTTCCTTTCAACCGCGGTGGCCAATTTCCTCCTCATCACCATTTTCAGCTTCACGGCCAGTGGAATAATAATCCAGTGGCCACACCCTTATCTTTACACAGGGACCACGTCCTCCACTTGCCGCACAATAATAATGTCAGTTTATTTCATAATACCTATAATCATCATCATCATAATCATAATCGTCATCCTGTTCTTGACGGCTCGTCCTACGGTGGGGCATCGGCTTTTTACCATTTGAGATCCCCCTCCACAGCGCCGCAGATAGGGGCAGTGCCGGTTGTAGCAGATGGAAAGGGTGGTGGTAGCAGTGGTGGTGGTGGGAAAACGGCTGCGGCTAAGACGACATTGAGGCTTTTTGGTGTCAACATGGAATGTGCAGTATCTGAAGAGTCTGGTGATGATGAGTGTGACATAGGAACAACTTCGACGACGACAATGTTGTCGTCGTCTCAATTTCATGTTTATAATGGGATGCCGATGCCGATGCCGATGCTGATGCCGATGTCGATGCAGATGCCAATAAATAATAACAACGTATCAACCATGGATCATCGATGTCGTCGGTCTTTTTGGATTAAACTTCAGCAACAAGAGTCCATAGAGCATGTGGTGATTGCTGTCTCTAATTCCTTGGACAAATTGCAAAGTCCATGCAGGTTTTGA 1227 43.93 MDDFGSSSRFHHHQYYNFESSSSSNNNNNNRRSRDFDDDEQQQQQDQEMEECGNNNNDNNNNNNCCVFVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDASSNEKGLLLNFEDRCGKLWRFRYSYWTSSQSYVMTKGWSRFVKDKRLDAGDIVSFQRPLHHAKDRFFIDWRRRPPHPTVDMPFPFNRGGQFPPHHHFQLHGQWNNNPVATPLSLHRDHVLHLPHNNNVSLFHNTYNHHHHNHNRHPVLDGSSYGGASAFYHLRSPSTAPQIGAVPVVADGKGGGSSGGGGKTAAAKTTLRLFGVNMECAVSEESGDDECDIGTTSTTTMLSSSQFHVYNGMPMPMPMLMPMSMQMPINNNNVSTMDHRCRRSFWIKLQQQESIEHVVIAVSNSLDKLQSPCRF 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 21656637 21658361 - ClCG07G008140.2 Cla07g00776 276764

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00776 408 CDD B3_DNA 73 162 IPR003340 GO:0003677
Cla07g00776 408 SUPERFAMILY DNA-binding pseudobarrel domain 72 177 IPR015300 -
Cla07g00776 408 ProSiteProfiles B3 DNA-binding domain profile. 75 179 IPR003340 GO:0003677
Cla07g00776 408 SMART B3_2 75 179 IPR003340 GO:0003677
Cla07g00776 408 MobiDBLite consensus disorder prediction 15 56 - -
Cla07g00776 408 Gene3D - 68 183 IPR015300 -
Cla07g00776 408 Pfam B3 DNA binding domain 75 178 IPR003340 GO:0003677
Cla07g00776 408 MobiDBLite consensus disorder prediction 15 30 - -
Cla07g00776 408 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 25 338 IPR044800 GO:0003700
Cla07g00776 408 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 25 338 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00776 - - - bhj:120090999 519.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00776 Cla-Chr7:21656637 Cla01g02224 Cla-Chr1:36179396 2.95E-13 dispersed
Cla03g01321 Cla-Chr3:28238405 Cla07g00776 Cla-Chr7:21656637 9.33E-26 transposed
Cla06g00220 Cla-Chr6:2625118 Cla07g00776 Cla-Chr7:21656637 1.03E-63 transposed
Cla10g01776 Cla-Chr10:33700239 Cla07g00776 Cla-Chr7:21656637 8.06E-47 transposed
Cla01g00124 Cla-Chr1:1170541 Cla07g00776 Cla-Chr7:21656637 2.24E-60 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g277 . . . . . . Bma07g01046 Bma14g00089 Cmo06g00500 Cmo16g00647 . . . Car15g01205 . Cpe14g00507 . . . . . . . . Cla07g00776 Cam07g0833 Cec07g0888 Cco07g0865 Clacu07g0810 Cmu07g0816 Cre07g1170 . . . . . . . Cme07g01632 Blo03g00788 Blo19g00130 Bda07g00161 . Bpe08g00913 Bpe11g00381 . . . . . Cma06g00497 Cma16g00597 . . Cpe08g00992 . . . . . . . . . . . . . . . . Csa04g00592 Chy07g01218 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla10g01776 . 41 156 RAV Transcription Factor Family AT2G36080 76.7 7.7e-48 187.2
Cla06g00220 . 86 201 RAV Transcription Factor Family AT2G36080 68.9 5.7e-43 171.0
Cla07g00776 . 67 178 RAV Transcription Factor Family AT2G36080 70.1 7.8e-40 160.6
Cla01g00124 . 51 160 RAV Transcription Factor Family AT2G36080 69.0 1.3e-39 159.8
Cla05g02328 . 178 322 RAV Transcription Factor Family AT2G36080 54.8 3.3e-38 155.2
Cla01g00124 . 51 166 RAV Transcription Factor Family AT2G46870 87.2 2.1e-56 216.5
Cla06g00220 . 81 332 RAV Transcription Factor Family AT2G46870 50.2 3.8e-53 205.7
Cla07g00776 . 70 202 RAV Transcription Factor Family AT2G46870 74.1 7.8e-51 198.0
Cla05g02328 . 183 291 RAV Transcription Factor Family AT2G46870 69.6 3.1e-39 159.5
Cla10g01776 . 36 152 RAV Transcription Factor Family AT2G46870 65.8 4.5e-38 155.6
Cla10g01776 . 34 163 RAV Transcription Factor Family AT3G11580 65.9 5.3e-44 174.9
Cla06g00220 . 88 208 RAV Transcription Factor Family AT3G11580 59.1 7.9e-40 161.0
Cla01g00124 . 51 162 RAV Transcription Factor Family AT3G11580 61.8 6.7e-39 157.9
Cla07g00776 . 70 178 RAV Transcription Factor Family AT3G11580 63.9 1.5e-38 156.8
Cla01g00124 . 50 166 RAV Transcription Factor Family AT3G61970 80.8 2.4e-52 203.0
Cla06g00220 . 89 324 RAV Transcription Factor Family AT3G61970 50.2 4.1e-49 192.2
Cla07g00776 . 69 206 RAV Transcription Factor Family AT3G61970 68.8 9.2e-49 191.0
Cla05g02328 . 183 291 RAV Transcription Factor Family AT3G61970 70.0 1.7e-39 160.2
Cla06g00220 . 62 201 RAV Transcription Factor Family AT4G01500 61.0 2.5e-42 169.9
Cla01g00124 . 52 163 RAV Transcription Factor Family AT4G01500 69.7 7.1e-42 168.3
Cla07g00776 . 71 178 RAV Transcription Factor Family AT4G01500 66.4 6.3e-38 155.2
Cla10g01776 . 41 236 RAV Transcription Factor Family AT5G06250 55.0 2.0e-50 196.4
Cla06g00220 . 91 201 RAV Transcription Factor Family AT5G06250 64.5 1.8e-40 163.3
Cla01g00124 . 52 160 RAV Transcription Factor Family AT5G06250 64.7 2.0e-39 159.8
Cla05g02328 . 183 291 RAV Transcription Factor Family AT5G06250 62.4 7.2e-37 151.4
Cla06g01223 . 73 367 RAV Transcription Factor Family AT1G50680 52.2 3.4e-84 308.9
Cla03g01321 CCT,ECH 47 323 RAV Transcription Factor Family AT1G50680 53.1 7.4e-79 291.2
Cla06g01223 . 69 367 RAV Transcription Factor Family AT1G51120 52.7 1.6e-84 310.1
Cla03g01321 CCT,ECH 52 279 RAV Transcription Factor Family AT1G51120 61.0 1.9e-77 286.6
Cla05g02328 . 1 347 RAV Transcription Factor Family AT1G13260 62.3 2.5e-106 382.5
Cla03g00943 . 1 312 RAV Transcription Factor Family AT1G13260 58.1 1.2e-92 337.0
Cla01g00124 . 53 160 RAV Transcription Factor Family AT1G13260 71.6 8.4e-38 154.8
Cla10g01776 . 41 153 RAV Transcription Factor Family AT1G13260 69.0 1.4e-37 154.1
Cla06g00220 . 87 201 RAV Transcription Factor Family AT1G13260 66.4 1.4e-37 154.1
Cla05g02328 . 6 314 RAV Transcription Factor Family AT3G25730 64.0 9.8e-100 360.5
Cla03g00943 . 34 313 RAV Transcription Factor Family AT3G25730 61.8 1.0e-88 323.9
Cla10g01776 . 41 153 RAV Transcription Factor Family AT3G25730 64.6 1.5e-36 150.6
Cla05g02328 . 1 348 RAV Transcription Factor Family AT1G68840 61.9 3.4e-111 398.7
Cla03g00943 . 1 316 RAV Transcription Factor Family AT1G68840 55.2 4.2e-93 338.6
Cla10g01776 . 41 155 RAV Transcription Factor Family AT1G68840 69.8 1.0e-38 157.9
Cla01g00124 . 52 160 RAV Transcription Factor Family AT1G68840 70.3 1.7e-38 157.1
Cla06g00220 . 91 208 RAV Transcription Factor Family AT1G68840 63.3 1.1e-37 154.5
Cla05g02328 . 6 314 RAV Transcription Factor Family AT3G25730 64.0 9.8e-100 360.5
Cla03g00943 . 34 313 RAV Transcription Factor Family AT3G25730 61.8 1.0e-88 323.9
Cla10g01776 . 41 153 RAV Transcription Factor Family AT3G25730 64.6 1.5e-36 150.6
Cla06g01223 . 69 367 RAV Transcription Factor Family AT1G51120 52.7 1.6e-84 310.1
Cla03g01321 CCT,ECH 52 279 RAV Transcription Factor Family AT1G51120 61.0 1.9e-77 286.6
Cla10g01776 . 34 163 RAV Transcription Factor Family AT3G11580 65.9 5.3e-44 174.9
Cla06g00220 . 88 208 RAV Transcription Factor Family AT3G11580 59.1 7.9e-40 161.0
Cla01g00124 . 51 162 RAV Transcription Factor Family AT3G11580 61.8 6.7e-39 157.9
Cla07g00776 . 70 178 RAV Transcription Factor Family AT3G11580 63.9 1.5e-38 156.8
Cla06g00220 . 62 201 RAV Transcription Factor Family AT4G01500 61.0 2.5e-42 169.9
Cla01g00124 . 52 163 RAV Transcription Factor Family AT4G01500 69.7 7.1e-42 168.3
Cla07g00776 . 71 178 RAV Transcription Factor Family AT4G01500 66.4 6.3e-38 155.2
Cla10g01776 . 41 156 RAV Transcription Factor Family AT2G36080 76.7 7.7e-48 187.2
Cla06g00220 . 86 201 RAV Transcription Factor Family AT2G36080 68.9 5.7e-43 171.0
Cla07g00776 . 67 178 RAV Transcription Factor Family AT2G36080 70.1 7.8e-40 160.6
Cla01g00124 . 51 160 RAV Transcription Factor Family AT2G36080 69.0 1.3e-39 159.8
Cla05g02328 . 178 322 RAV Transcription Factor Family AT2G36080 54.8 3.3e-38 155.2
Cla10g01776 . 41 236 RAV Transcription Factor Family AT5G06250 55.0 2.0e-50 196.4
Cla06g00220 . 91 201 RAV Transcription Factor Family AT5G06250 64.5 1.8e-40 163.3
Cla01g00124 . 52 160 RAV Transcription Factor Family AT5G06250 64.7 2.0e-39 159.8
Cla05g02328 . 183 291 RAV Transcription Factor Family AT5G06250 62.4 7.2e-37 151.4
Cla01g00124 . 51 166 RAV Transcription Factor Family AT2G46870 87.2 2.1e-56 216.5
Cla06g00220 . 81 332 RAV Transcription Factor Family AT2G46870 50.2 3.8e-53 205.7
Cla07g00776 . 70 202 RAV Transcription Factor Family AT2G46870 74.1 7.8e-51 198.0
Cla05g02328 . 183 291 RAV Transcription Factor Family AT2G46870 69.6 3.1e-39 159.5
Cla10g01776 . 36 152 RAV Transcription Factor Family AT2G46870 65.8 4.5e-38 155.6
Cla06g01223 . 73 367 RAV Transcription Factor Family AT1G50680 52.2 3.4e-84 308.9
Cla03g01321 CCT,ECH 47 323 RAV Transcription Factor Family AT1G50680 53.1 7.4e-79 291.2
Cla01g00124 . 50 166 RAV Transcription Factor Family AT3G61970 80.8 2.4e-52 203.0
Cla06g00220 . 89 324 RAV Transcription Factor Family AT3G61970 50.2 4.1e-49 192.2
Cla07g00776 . 69 206 RAV Transcription Factor Family AT3G61970 68.8 9.2e-49 191.0
Cla05g02328 . 183 291 RAV Transcription Factor Family AT3G61970 70.0 1.7e-39 160.2
Cla05g02328 . 1 347 RAV Transcription Factor Family AT1G13260 62.3 2.5e-106 382.5
Cla03g00943 . 1 312 RAV Transcription Factor Family AT1G13260 58.1 1.2e-92 337.0
Cla01g00124 . 53 160 RAV Transcription Factor Family AT1G13260 71.6 8.4e-38 154.8
Cla10g01776 . 41 153 RAV Transcription Factor Family AT1G13260 69.0 1.4e-37 154.1
Cla06g00220 . 87 201 RAV Transcription Factor Family AT1G13260 66.4 1.4e-37 154.1
Cla05g02328 . 1 348 RAV Transcription Factor Family AT1G68840 61.9 3.4e-111 398.7
Cla03g00943 . 1 316 RAV Transcription Factor Family AT1G68840 55.2 4.2e-93 338.6
Cla10g01776 . 41 155 RAV Transcription Factor Family AT1G68840 69.8 1.0e-38 157.9
Cla01g00124 . 52 160 RAV Transcription Factor Family AT1G68840 70.3 1.7e-38 157.1
Cla06g00220 . 91 208 RAV Transcription Factor Family AT1G68840 63.3 1.1e-37 154.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000626 3 5 4 4 3 3 5 3 3 3 3 3 6 3 3 6 3 1 4 3 3 2 3 3 3 3 2 7 4 2 103
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61407 PF02362 B3 1.60E-27 CL0405 Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla07g00776 Cla_Chr07 FPKM 9.257113 10.46538 12.916302 10.914652 23.486506 24.538626 24.347235 13.691414 13.828074 13.828606