Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00782 ATGGATATATATGCGAGGACAATTATCACCATTGGTATGAGAAAAGCTGAAGATCAGATCCAGCCACAAGGCAAAATCATGAGTAGAGGTGGAAGCTATGGTGGTGGAAGAAGCTCCTTAGGCTATCTTTTTGGTAAGGATGATCAACCCAGAAAGCCTCAAGTTTCCAAAGTTGTTCTTCCTCCTCCTTATGGAATTGATCTCAACCCTGATGATAATAACAATAATCCTTCTCCCTTTCCGAAACAACTTCTTTCCAACAATTATCCTCGAGCTCATGGCCAAAACTCCGGCAACTTCATAACGGATCGTCCATCAACCAAGGTGAAATCTGCTCCGGGTGGTGATTCGTCGCTAGGGTATCTGTTTGGAGATAAGTGA 381 43.31 MDIYARTIITIGMRKAEDQIQPQGKIMSRGGSYGGGRSSLGYLFGKDDQPRKPQVSKVVLPPPYGIDLNPDDNNNNPSPFPKQLLSNNYPRAHGQNSGNFITDRPSTKVKSAPGGDSSLGYLFGDK 126
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 21869281 21870502 + ClCG07G008200.1 Cla07g00782 276770

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00782 126 PANTHER SPR1 27 126 IPR039613 GO:0043622
Cla07g00782 126 MobiDBLite consensus disorder prediction 69 106 - -
Cla07g00782 126 MobiDBLite consensus disorder prediction 38 126 - -
Cla07g00782 126 PANTHER PROTEIN SPIRAL1-LIKE 5 27 126 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00782 K18635 SPR1; protein SPIRAL1 and related proteins - csv:101209879 171.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00782 Cla-Chr7:21869281 Cla11g00454 Cla-Chr11:5165003 5.19E-14 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g30 . . . . . . . . . . . . . . . . . . . . . . . . Cla07g00782 Cam07g0839 Cec07g0895 Cco07g0873 Clacu07g0816 Cmu07g0822 Cre07g1176 . . Cone6ag0801 . . . . Cme07g01636 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00589 Chy07g01222 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013243 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla07g00782 Cla_Chr07 FPKM 1.520055 1.846388 0.0 0.0 1.225851 1.088003 1.183028 0.0 0.0 0.0