Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00785 ATGGAGTCCAAGATTCCCAAAATGAGTGGGGTTGAGTTCATGGGGAGATGGCCTATTTCATCCAATGCTTCCATTTTAGATTGCAACAAAGATGTTGATCCTAGTCCCAGTAATGGCTGTTGCATTGCCCCGGCTTGTTCGGTAGAGGGAAGTTATGCGAATGTTGACTATGATGATTACAAAGCCACAATTAGATGTTATTTTGAGAAAATTCTTTGGGTTTTTCTGAAGGAAATTGGTCGTAGAGGACTTATTAGGCCAGTGCCGGCGTTACTAGGTGAAGGGGGATCTTTGGATTTGTTTGAACTCTTCATGGTAGTAAGAGATAAAGGAGGTTATCAAGTGGTTTCAGAAAAGGAACTATGGTCTTCAGTGGTTTTGGAATTAGGTTTGGATCTTGGGCTTTCGGCTTCAGTGAAGTTGATTTATTTGAAGTATTTAAATGACGTAGAGAAATGGCTTATGGTGAGATGTGGAGGCACAAAACTGGAAAATGGGAACTCTGATTATCACTACAGGAAAAGCTTTCCATTTTTGTCAGAACTGGAGGTGAAGATTAAGGGTATGTTATTTGGTGTGCTGAGACAAAAGAGCATATATGATGAATGTTCTAGATTCAAATCTAACAAACCAAATGAGAACGTTAATGTTGCTGCCGCTACAGTGGAGAAGGAAATAAAGAAGAAAGAACACGATCTTCATGGGGATGTTACACCAATTCAACAAAATTGTATCGATACACCTCGGGATAATGGCGAAACCGATCAAATCCATGTTATTGAAGATTGTAGAATTTTGGATGCTGTTAATGTTGAAACTGACATAGACTCTCATGGGAGATATCGAAAATCGTTATTACAAATGCTGAAGTGGGTGAGAAAGACTGCAAAGCATCCTGTAAATCCATTAAATGGTACAATACCAGGGGCATCCAAGTGGAAAGCGTATGCTAGCGATGATGCATTATGGCTTCAAGTTATCAGGGCAAAGAATGCTCTTTTAACTAGGAAGGATGTTGACAAAAATGCTGAGAAACGTCTGTTAATACAGACAGAGGACTTAAATCTCCTTTTCCTTCTTTTACCTGTCGATGCTCTTAATCATCTACTAGAAAGGGTTCAGAGGACTTGTCTATCAATTTTAGATAGGTGGAGGCATGAGTTCAAACTCATCTGCTGTACATTGATTCTCCATGTTGTCGTGGAAGAGATCGACCAAGTGGAGAAACCCTTTCTGGAAGGAGGAGGACTTACCCTTAGCCAATTGATAAACTTGGATTCCAAGAACATTGTTTTTCTGGATAAGTGGGTTTTAGAGATTCTAATTGGAGGTGACTTTGCGTTTGGCGTAAAATTATTATGGGCAAGAGCAGTCTTTAGGTTAATGACTAATCCTTCATTCTTCTTAGAGGTAGTACACATCGTAGTCCTTGGAAGTTCATTTTCTTGGGCTTTTGTCCTCGTCCTTGACGATGTAGATTGTGTTTTTAGGAGCAGAGGTGGTCTAAAAGTTGGTCTAGTAGGAGCCCTCAGTCTACTCTTTCTTGACAAAATATATATACATATAGGAAAAATAAAAGGAGAGAAGCCTCAACCCACAACTAAGGAGAAGAAAGTAAGGATGCATCCATCCATTTATGAGGATAATATTGATAAACATCACCTTTCTACAGAAAGGATCTGTTGCAGCAAAAGATCTAATGCTTTGGTCGAATCCGTCTTCGTCACGCATAATAATTCATGTCCAATCGTTCAAAGTAATTGTATTAGTAGTCTAACAACAGAAATTGGGAAGGGACTCAAGAAGAATCGAGCACTTTTGAATGGTGATTTTCCATCGGAAACGGAAGACAATCAGCCAAATGAAGATTCTGTTGATAAGCCAGTTCCCGTGGGTGCTTTATTTCAAGCAGTGGTTCCTGAATGGACTGGTAATATTTCCGATAGCGACTCTAAATGGCTAGGGACAAAGTCGTGGCCTTCTCCACACGGAAATAGTAATTCCGTAAGTGATAGAAATCCCATTGGTAGAGGGAGACTGGATTCATGTAGATGTCAATTTCCAGGTTCTGTTGAATGTTTTAGATTTCACATTGCGGAAGCGAGGATGAGATTAAAGCTTGAACTTGGTTTGACATTCTACGATTGGAGATTTCATCATATGGGGGAGGAAATATCTCTGCAGTGGACTGCCGAAGAGGAAAAGAGATTTAAGGAGTTGGCAACATCAAGTTTTAACAATCAGAGCCAGTGCTTTTGGAGTTATTCCTTGAAGTGGTTCCCATTGAAATCAAAGAAAAATTTGATAAGCTATTACTTCAATGTGTTTCTTTTACGGCAGAGAAGCTATCAGAATCGTGTGACTCCAAATAGCATTGATAGCGATGATGAAGATGTAGAGTTTGGTTGCATCAGTGGTGACTTTGGGGCTAAGGCAATGGAAATTTTAGGCTCAAAGTCTGTAGAATGTTCTGAAAATAGACAATTCACAGATGTGGAGTAG 2502 39.65 MESKIPKMSGVEFMGRWPISSNASILDCNKDVDPSPSNGCCIAPACSVEGSYANVDYDDYKATIRCYFEKILWVFLKEIGRRGLIRPVPALLGEGGSLDLFELFMVVRDKGGYQVVSEKELWSSVVLELGLDLGLSASVKLIYLKYLNDVEKWLMVRCGGTKLENGNSDYHYRKSFPFLSELEVKIKGMLFGVLRQKSIYDECSRFKSNKPNENVNVAAATVEKEIKKKEHDLHGDVTPIQQNCIDTPRDNGETDQIHVIEDCRILDAVNVETDIDSHGRYRKSLLQMLKWVRKTAKHPVNPLNGTIPGASKWKAYASDDALWLQVIRAKNALLTRKDVDKNAEKRLLIQTEDLNLLFLLLPVDALNHLLERVQRTCLSILDRWRHEFKLICCTLILHVVVEEIDQVEKPFLEGGGLTLSQLINLDSKNIVFLDKWVLEILIGGDFAFGVKLLWARAVFRLMTNPSFFLEVVHIVVLGSSFSWAFVLVLDDVDCVFRSRGGLKVGLVGALSLLFLDKIYIHIGKIKGEKPQPTTKEKKVRMHPSIYEDNIDKHHLSTERICCSKRSNALVESVFVTHNNSCPIVQSNCISSLTTEIGKGLKKNRALLNGDFPSETEDNQPNEDSVDKPVPVGALFQAVVPEWTGNISDSDSKWLGTKSWPSPHGNSNSVSDRNPIGRGRLDSCRCQFPGSVECFRFHIAEARMRLKLELGLTFYDWRFHHMGEEISLQWTAEEEKRFKELATSSFNNQSQCFWSYSLKWFPLKSKKNLISYYFNVFLLRQRSYQNRVTPNSIDSDDEDVEFGCISGDFGAKAMEILGSKSVECSENRQFTDVE 833
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 22001348 22006866 - ClCG07G008230.2 Cla07g00785 276773

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00785 833 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 14 345 - -
Cla07g00785 833 Pfam ARID/BRIGHT DNA binding domain 81 148 IPR001606 GO:0003677
Cla07g00785 833 ProSiteProfiles ARID domain profile. 62 155 IPR001606 GO:0003677
Cla07g00785 833 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 531 832 - -
Cla07g00785 833 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 14 345 - -
Cla07g00785 833 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 531 832 - -
Cla07g00785 833 SMART bright_3 62 156 IPR001606 GO:0003677
Cla07g00785 833 MobiDBLite consensus disorder prediction 607 627 - -
Cla07g00785 833 Gene3D - 55 159 IPR036431 GO:0003677
Cla07g00785 833 SUPERFAMILY ARID-like 65 155 IPR036431 GO:0003677
Cla07g00785 833 Coils Coil 212 232 - -
Cla07g00785 833 CDD ARID 68 151 - -
Cla07g00785 833 SMART ARID_2 51 151 - -
Cla07g00785 833 MobiDBLite consensus disorder prediction 653 673 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00785 - - - csv:101219426 556.984
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00336 Cla-Chr6:4288799 Cla07g00785 Cla-Chr7:22001348 6.72E-07 dispersed
Cla06g01554 Cla-Chr6:29120317 Cla07g00785 Cla-Chr7:22001348 4.00E-25 dispersed
Cla05g00159 Cla-Chr5:1465825 Cla07g00785 Cla-Chr7:22001348 2.43E-15 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g13 . . . . . . Bma07g01663 . . Cmo16g00656 . . . . . Cpe14g00511 . . . . . . . . Cla07g00785 Cam07g0845 Cec07g0897 Cco07g0880 Clacu07g0820 Cmu07g0824 Cre07g1181 . . Cone6ag0789 Cone9ag0791 . . . Cme07g01639 . . . Bda09g00033 . . . . . . . . Cma16g00601 . . . . . . . . . . . . . . . . . . . . Chy07g01224 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008781 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 2 1 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61408 PF01388 ARID 1.80E-08 CL0123 Cla TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla07g00785 Cla_Chr07 FPKM 5.724895 5.091478 5.241791 5.118761 4.092659 3.964046 3.715157 4.243782 4.217626 4.009726