Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00812 ATGGAATTAAAAAACCAACAACAAACCACATCCTCATCTGATCATCACCTTCCTTTTCAATATTCCCTCACAGCTACAACAGATCATCTTCCTCTCAACCCAGATCCCGCCGCCGCTTCCCCATCATCTCCGGTTCGTTACCGTCAATGTTTGAAGAACCACGCCGTTAAGACCGGCGGTCACGTGCTCGATGGCTGCGGTGAGTTTATGCCGAGTGGGGAAGATGGTACTCCTGATAGCTTCAAGTGCGCCGCCTGCGAATGCCACCGGAGTTTCCACCGGAGAGTATTGGAAGAGGAGGATATGACCAACGCTCGGCTTAACCTCCCAACTTACGCGCCACCACCATATAATTCTCATTTAAATGGCGGTAAAAATAATAACCAGTACCCTATGTGGAGCTGTGTTGCTCCGGTGATGATGACGTTGGGGGGTTCGGTGGAAGCCCCAGCAGAGTCGTCAAGCGACGGCGCAGAAGCATCGGGGAAGCCGAAGAAGCGGTTTAGGACAAAATTCAGCGGAGGACAGAAGGTTAAGATGATGGAGTTGGCCAACAAGCTGGGATGGAAGATTCAGAAGGATGATGAGCAACAAGTGCATAAATTTTGCAACCAAATTGGGATAAAAACACTAAATTTTAAGGTTTGGATGCACAACAACAAACCCACCAACAACAATTCATCAGGATAA 690 48.55 MELKNQQQTTSSSDHHLPFQYSLTATTDHLPLNPDPAAASPSSPVRYRQCLKNHAVKTGGHVLDGCGEFMPSGEDGTPDSFKCAACECHRSFHRRVLEEEDMTNARLNLPTYAPPPYNSHLNGGKNNNQYPMWSCVAPVMMTLGGSVEAPAESSSDGAEASGKPKKRFRTKFSGGQKVKMMELANKLGWKIQKDDEQQVHKFCNQIGIKTLNFKVWMHNNKPTNNNSSG 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 22610573 22612841 - ClCG07G008540.1 Cla07g00812 276800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00812 229 SUPERFAMILY Homeodomain-like 152 222 IPR009057 -
Cla07g00812 229 Pfam ZF-HD protein dimerisation region 45 96 IPR006456 -
Cla07g00812 229 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 46 95 IPR006456 -
Cla07g00812 229 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 8 223 - -
Cla07g00812 229 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 8 223 - -
Cla07g00812 229 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 47 96 IPR006456 -
Cla07g00812 229 MobiDBLite consensus disorder prediction 148 172 - -
Cla07g00812 229 Gene3D - 150 228 - -
Cla07g00812 229 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 165 221 IPR006455 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g01913 Cla07g00812 CCT
Cla01g01913 Cla07g00812 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00812 Cla-Chr7:22610573 Cla08g01483 Cla-Chr8:27702836 1.62E-48 dispersed
Cla01g01913 Cla-Chr1:33858466 Cla07g00812 Cla-Chr7:22610573 5.50E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61410 PF04770 ZF-HD_dimer 4.20E-29 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00812 - - csv:101218004 323.553