Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00830 ATGAAAAAACTTGACAAAAGTGATGTTGCACTTGTCCAACTCATCGAATCAGGGATAAGCACTTGTTGGGCTAACAAATTCATCCTTAATGTCATTTGCCGGAGTCATCGCCGAACGTCCGCCTCCTCCAATGCCTGCAACTTTGCAATGATCGTTCTCTCCCGCAACCTCTCCACAGTCTCCAAGCTTAGCCATTTCCAGAACCACCAAACACCGGCGACGCCAACTTTCATTCCATTTTCTCAGTTGCAACAGCAACGGAAGCTTTTAGAATGGCGACTCATAAGTATTCTTCACGACTGCACGGTTTTTTCTCAAATCAAGCAAGTCCATGGCCATATCGTCCGCAACGGATTGAGTCAATGCTCTTACGTCCTCACCAAACTCATCCGCATGCTCACGAGGGTAGATGTCCCGATGGATTCCTACCCACGTCTGGTTTTTGGACAGGTTAATTACCCCAACCCCTTTCTTTGGACTGCCATGATTCGTGGGTATGCGCTTCAAGGACTCTTGCCTGAATCTATTAACTTGTATACTAGAATGAGGAGGGATGGCGTCGGTCCTGTTTCGTTTACGTTTTCGGCGCTTTTTAAGGCTTGTGGGGCTGCTCTTAATCTGGATTTGGGTAAGCAGGTGCATGTCCAGACGATTTTGATTGGGGAATTTGCTTCTGATTTGTATGTTGGTAATTCGATGATTGATATGTATGTGAAATGTGGGTTCTTGGGTTGTGCGCGGAAGGTGTTCGATGAAATGTCTGAGAGAGATGTGGTTTCTTGGACTGAGTTGATTGTTGCATATGCAAAGTTTGGGGATATGGAATCTGCTAGTGACCTGTTTGACGGATTGCCTTTGAAGGATGTGGTGGCATGGACAGCAATGGTCACTGGTTATGCCCAAAATGCTAGACCAAAGGAGGCATTGGAGTATTTTCAGAAAATGCAGGATATTGGCATGGACACCGATGACGTTACGCTGGTTGGTGTCATCTCGGCCTGTGCACAATTGGGTGCAGTTAAACATGCCAACTGGATTAGAGACATTGCTGAAAGATCAGGTTTTGGACCTTCTGAAAATGTTGTCGTGGGATCTGCTCTTATTGATATGTACTCTAAATGTGGCAGTCCTGATGAGGCATATAAGGTTTTTGAAGCAATGAAGGAAAGAAATGTGTTTTCTTATAGTTCAATGATTGTGGGATATGCAATGCATGGTCGTGCTCATTCAGCTTTGCAGTTGTTCCATGAGATGTTAAAGACAGAAATCAGGCCAAATAAGGTTACTTTTATAGGGGTGCTTTCAGCTTGCAGCCATGCCGGTTTGGTTGAACAAGGTCGGCAGCTATTCGCTAAGATGGAGAAGTATTTTAGTGTTGCTCCTTCACCTGATCATTATGCATGTATGGTAGATCTCCTTGGTCGAGCTGGATGTTTGGAAGAAGCGCTTGAGCTCATTGAAACTATGCCAATGGAACCCCACGGAGGTGTATGGGGAGCACTGCTTGGAGCTTGCCGCATCCATGGGAATCCTGGCATTGCTCAGATAGCTGCGAACCAACTATTCAAGCTCGAACCAGATGGTATAGGGAACTACATTCTGCTATCAAACATATATGCATCAGCAGGAAGGTGGGAAGAAGTATCGAAATTGAGGAAAGTGATTAGAGAAAAAGGCTTAAAAAAGAATCCTGGGTGCAGCTGGTTTGAAGGAAAGAAAGGGGAAATTCACGAGTTCTTTGCCGGTGATACAACCCATCCACGATCAAGTGAGATTAGACAAGCCTTGAAGCAACTCCTTGAAAGATTAAGAGCTCATGGATACAAGCCAAACTTGAGCTCTGTGCCTTATGATTTGAGTGATGATGAAAAGGAACGAATACTGATGAGTCATAGTGAAAAGCTTGCATTGGCATATGGATTGCTATGTACTGATGCTGGTGATACCATTAAGATCACGAAAAACCTTAGAATATGCGAGGATTGCCACAATGTCATGTGTGCTGCATCCGAGATCACTGGAAGAGAGATCATTATAAGGGATAACATGAGATTTCATCACTTCCACAACGGGACTTGTTCTTGTGTCTTCTCATTCTCAACTGATTCCTTCTTGGCTGCCATTTTTGAGAAGCACTCTGCCTTAGGCATTGTGGTGAGAACGGACGAAAGGCTTCAAAGGCTTAAAAGTGGACCATCAAGCTATATTCTGTTGCTATTTCTTTGTGTTCCTTCGTGCTTCCTGAGGCCGGCCAAAATTGCTTTGATTTTAGCTAGAGATTCCGGATTGATGATGTTCATACTGGAAGCTGACATTGCCATCATACTCCAGAGGAATCACGAATTGCAGCTCCAATACCAGTTAAGTTTGAAGAGGACCAGATGCCCCACCAAGCAATTGCAACTATCAATGAAACTACTGTTTAAATTGGAACTGAGGAGGGGACATGATGAAAGAACTTTCCAGATGGATCGAGCTCGAGCACATGTGAAAAAGATATGA 2502 44.28 MKKLDKSDVALVQLIESGISTCWANKFILNVICRSHRRTSASSNACNFAMIVLSRNLSTVSKLSHFQNHQTPATPTFIPFSQLQQQRKLLEWRLISILHDCTVFSQIKQVHGHIVRNGLSQCSYVLTKLIRMLTRVDVPMDSYPRLVFGQVNYPNPFLWTAMIRGYALQGLLPESINLYTRMRRDGVGPVSFTFSALFKACGAALNLDLGKQVHVQTILIGEFASDLYVGNSMIDMYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKFGDMESASDLFDGLPLKDVVAWTAMVTGYAQNARPKEALEYFQKMQDIGMDTDDVTLVGVISACAQLGAVKHANWIRDIAERSGFGPSENVVVGSALIDMYSKCGSPDEAYKVFEAMKERNVFSYSSMIVGYAMHGRAHSALQLFHEMLKTEIRPNKVTFIGVLSACSHAGLVEQGRQLFAKMEKYFSVAPSPDHYACMVDLLGRAGCLEEALELIETMPMEPHGGVWGALLGACRIHGNPGIAQIAANQLFKLEPDGIGNYILLSNIYASAGRWEEVSKLRKVIREKGLKKNPGCSWFEGKKGEIHEFFAGDTTHPRSSEIRQALKQLLERLRAHGYKPNLSSVPYDLSDDEKERILMSHSEKLALAYGLLCTDAGDTIKITKNLRICEDCHNVMCAASEITGREIIIRDNMRFHHFHNGTCSCVFSFSTDSFLAAIFEKHSALGIVVRTDERLQRLKSGPSSYILLLFLCVPSCFLRPAKIALILARDSGLMMFILEADIAIILQRNHELQLQYQLSLKRTRCPTKQLQLSMKLLFKLELRRGHDERTFQMDRARAHVKKI 833
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 22974479 22979594 - ClCG07G008710.1 Cla07g00830 276818

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00830 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 226 260 IPR002885 -
Cla07g00830 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 155 189 IPR002885 -
Cla07g00830 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 391 425 IPR002885 -
Cla07g00830 833 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 55 683 - -
Cla07g00830 833 Gene3D Tetratricopeptide repeat domain 92 218 IPR011990 GO:0005515
Cla07g00830 833 Gene3D Tetratricopeptide repeat domain 365 597 IPR011990 GO:0005515
Cla07g00830 833 Gene3D Tetratricopeptide repeat domain 219 362 IPR011990 GO:0005515
Cla07g00830 833 Pfam E+ motif 576 603 IPR046849 -
Cla07g00830 833 TIGRFAM PPR: pentatricopeptide repeat domain 158 189 IPR002885 -
Cla07g00830 833 TIGRFAM PPR: pentatricopeptide repeat domain 290 317 IPR002885 -
Cla07g00830 833 TIGRFAM PPR: pentatricopeptide repeat domain 231 259 IPR002885 -
Cla07g00830 833 TIGRFAM PPR: pentatricopeptide repeat domain 393 426 IPR002885 -
Cla07g00830 833 TIGRFAM PPR: pentatricopeptide repeat domain 366 392 IPR002885 -
Cla07g00830 833 Pfam PPR repeat 158 187 IPR002885 -
Cla07g00830 833 Pfam PPR repeat 466 490 IPR002885 -
Cla07g00830 833 Pfam PPR repeat 231 257 IPR002885 -
Cla07g00830 833 Pfam PPR repeat 259 282 IPR002885 -
Cla07g00830 833 PANTHER BNAC09G18050D PROTEIN 55 683 - -
Cla07g00830 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 360 390 IPR002885 -
Cla07g00830 833 Pfam DYW family of nucleic acid deaminases 607 695 IPR032867 GO:0008270
Cla07g00830 833 Pfam E motif 509 570 IPR046848 -
Cla07g00830 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 288 322 IPR002885 -
Cla07g00830 833 Pfam PPR repeat family 287 335 IPR002885 -
Cla07g00830 833 Pfam PPR repeat family 390 438 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00830 - - - csv:101203412 1213.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01678 Cla-Chr1:31713081 Cla07g00830 Cla-Chr7:22974479 3.78E-178 dispersed
Cla07g00830 Cla-Chr7:22974479 Cla09g02091 Cla-Chr9:38444666 7.73E-179 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1035 . . . . . . . . . Cmo16g00690 . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy07g01258 . . . . . . . Bma03g00979 . . . . Cma16g00633 . . . . Cpe14g00540 . . . . . . . Cla07g00830 . . . . . . Lsi07g00239 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012740 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 0 1 1 1 1 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla07g00830 Cla_Chr07 FPKM 7.846711 8.209621 7.722366 7.697589 10.844352 11.430383 10.685944 11.156168 11.91094 12.937625