Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00839 ATGAAGAATATGGCCGGTTTTTTCCCACTAGGCGGCGCCGGAAGCAGCGGAAGAGGTTCCAATTATCATCTTCCTACAACTACTACTAGTATCACCACCAGCGGCGGCGAAATAATTCATCCCAACGAGGGGTTATTTTGGTACAAGAATTATGAGAGACTGGAAACGTGGGAAGAACAACAGCAACCGCAGGAACAAGGGGGAGAAGGATTTGTTTACTCGGGCGATGAATCGCCGGCTAGATCGTCGTTGGTGATGGTGAGATCGGGAAGAGGCGGCGGTGGAGGGCATGTAACGAGCTGCCAAGACTGTGGAAATCAAGCGAAAAAAGATTGCGTTTACATGCGATGTAGAACTTGTTGTAAAAGCCGTGGGTTTGAGTGTGAAACTCACGTTAAAAGCACTTGGGTTCCCGCCTCCAAACGCCGTGACCGCCACCTCCGTTGCCTCGCCTCTAACCCCAAACGCCCTAAAGACAACCCCGCTGCTTCTTCAGGGTTGGAAATGGGGAATTTTCCGGTGGAAGTAAACTCTACGGCGGTGTTTCGGTGCGTACGAATGACAACGTTGGACGAAACCAACGACCAATATGCGTATCAAACAGCTGTCAATATCGGAGGCCATATCTTCAAAGGCATTCTTTACGACCACGGCCCTGAACAACAACTACAACAACAGCCACCCACCTCCGCCTCCCCTGACGCCTCCGCCCTCCTCATCACCACCGCTGAATCCGCCGCATTGCTCGATCCACCTCCGCAGTACCCCACTCCTCTTTCCACCTACATCGCCACCGGTACGCAATTTTTTCTTCCCCCAACATCTTAA 828 51.93 MKNMAGFFPLGGAGSSGRGSNYHLPTTTTSITTSGGEIIHPNEGLFWYKNYERLETWEEQQQPQEQGGEGFVYSGDESPARSSLVMVRSGRGGGGGHVTSCQDCGNQAKKDCVYMRCRTCCKSRGFECETHVKSTWVPASKRRDRHLRCLASNPKRPKDNPAASSGLEMGNFPVEVNSTAVFRCVRMTTLDETNDQYAYQTAVNIGGHIFKGILYDHGPEQQLQQQPPTSASPDASALLITTAESAALLDPPPQYPTPLSTYIATGTQFFLPPTS 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 23199383 23200793 - ClCG07G008820.2 Cla07g00839 276827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00839 275 MobiDBLite consensus disorder prediction 19 37 - -
Cla07g00839 275 MobiDBLite consensus disorder prediction 16 37 - -
Cla07g00839 275 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 4 271 IPR007818 GO:0003700|GO:0006355
Cla07g00839 275 PANTHER PROTEIN SHORT INTERNODES 4 271 - -
Cla07g00839 275 Pfam Domain of unknown function (DUF702) 99 220 - -
Cla07g00839 275 MobiDBLite consensus disorder prediction 149 170 - -
Cla07g00839 275 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 172 219 IPR006511 -
Cla07g00839 275 MobiDBLite consensus disorder prediction 58 77 - -
Cla07g00839 275 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 100 142 IPR006510 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g01952 Cla07g00839 CCT
Cla01g01952 Cla07g00839 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00839 Cla-Chr7:23199383 Cla09g01313 Cla-Chr9:20577197 1.06E-49 dispersed
Cla01g01952 Cla-Chr1:34179641 Cla07g00839 Cla-Chr7:23199383 8.90E-49 wgd
Cla05g01902 Cla-Chr5:30859567 Cla07g00839 Cla-Chr7:23199383 2.49E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61413 PF05142 DUF702 1.10E-50 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00839 - - bhj:120073083 454.136