Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00851 ATGAACCACCAAGAAGCTGAAGAGCATGAAGCAGTACAAATCTCTCAGTTGTACACTGAATTATACATCCAAATGGTACCCCAACAAGGTAATTTGGGTGAGTCTAAACCGAGACGACGTCGTAAGAAGAACAGAGGATCGGAAGCAGAGGCGGCGGCAGGGGGGAAAAAGAGGAAACTGACGGCGGCGCAAGTTCATCTTTTGGAGTCGAATTTCGGGAGTGAACATAAATTGGAATCGGAAAGAAAGGACCGTTTAGCGTCGGAGTTGGGGCTGGATCCTCGGCAGGTGGCTGTCTGGTTTCAGAACCGCCGTGCACGGTGGAAGAACAAGAAACTTGAGGAGGAGTATTCTAACTTGAAGAAGCTTCATGAATCCGTCGTCGTTGAAAAATGTCGTCTAGAAACTGAGATATTGAAGCTGAAAGAACAACTATCAGAAGTAGAGAAAGAGAAAGAGAGGGTAATAATGGGAGAAGGGGGCGATGGGGGTTTAAGCAGCAGCAGCCCAAGCCCATCAATGTCATTGTCAATGGATGCGATGGACCCCACATGCCTTGGGGAAATTCCACCATCATATGAAGATGTGTTTTATTACATGCCTGAAAACTATTGTATTTATGGCATGGAATGGCCTAATCCCTACATTTGA 651 46.24 MNHQEAEEHEAVQISQLYTELYIQMVPQQGNLGESKPRRRRKKNRGSEAEAAAGGKKRKLTAAQVHLLESNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKLHESVVVEKCRLETEILKLKEQLSEVEKEKERVIMGEGGDGGLSSSSPSPSMSLSMDAMDPTCLGEIPPSYEDVFYYMPENYCIYGMEWPNPYI 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 23751856 23754548 + ClCG07G008960.1 Cla07g00851 276839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00851 216 Coils Coil 134 154 - -
Cla07g00851 216 PRINTS Lambda-repressor HTH signature 82 91 IPR000047 GO:0003677
Cla07g00851 216 PRINTS Lambda-repressor HTH signature 91 107 IPR000047 GO:0003677
Cla07g00851 216 Gene3D - 47 119 - -
Cla07g00851 216 CDD homeodomain 56 112 IPR001356 GO:0003677
Cla07g00851 216 SMART HOX_1 54 115 IPR001356 GO:0003677
Cla07g00851 216 Pfam Homeodomain 56 110 IPR001356 GO:0003677
Cla07g00851 216 MobiDBLite consensus disorder prediction 28 60 - -
Cla07g00851 216 Coils Coil 103 130 - -
Cla07g00851 216 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40-LIKE 9 215 - -
Cla07g00851 216 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 9 215 IPR045224 GO:0003700
Cla07g00851 216 ProSitePatterns 'Homeobox' domain signature. 86 109 IPR017970 GO:0000981|GO:0006355
Cla07g00851 216 ProSiteProfiles 'Homeobox' domain profile. 51 111 IPR001356 GO:0003677
Cla07g00851 216 SUPERFAMILY Homeodomain-like 56 119 IPR009057 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g01886 Cla07g00851 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01886 Cla-Chr1:33680655 Cla07g00851 Cla-Chr7:23751856 2.18E-58 dispersed
Cla07g00851 Cla-Chr7:23751856 Cla10g01857 Cla-Chr10:34485536 5.44E-25 dispersed
Cla07g00851 Cla-Chr7:23751856 Cla01g01422 Cla-Chr1:28719454 4.80E-27 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61416 PF00046 Homeodomain 4.70E-17 CL0123 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00851 K09338 - csv:101221080 327.02