Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00857 ATGCCAACGGACTTAGAAAATTCCTCCAACGCTTCTGGCGAAGTCAGTATCTCCTCCACTGGCAATCAGCCTCCGCCGCCCAAATCCGCCGTGAAAAAAAAGCGTAATTTACCCGGAATGCCAGATCCGGATGCAGAGGTAATTGCTCTGTCTCCGAAGACCCTTTTGGCTACAAATCGATTTGTGTGTGAAATTTGCAACAAAGGGTTTCAAAGAGATCAGAATCTGCAACTTCACCGGCGAGGTCACAATCTTCCATGGAAACTCCGGCAACGGACTAGCAAAGAGGTGAAAAAGAAAGTCTATGTCTGCCCGGAGCCGTCGTGCGTCCACCACCATCCGTCGAGAGCTCTCGGCGATCTGACCGGAATAAAGAAGCACTTCTGCCGGAAGCACGGCGAGAAGAAGTGGAAGTGCGAAAAGTGCTCTAAGAAATATGCAGTCAAGTCCGATTGGAAGGCTCATTCTAAGATTTGTGGCACCAGAGAGTACAAATGCGACTGTGAGACTGTGTTTTCGAGAAGAGATAGTTTCATCACTCACAGAGCCTTCTGTGATGCGTTGACGAAGGAGGTTGCTGGAAGTTTGTCTCCAGCGGCGGCGGAGAATCCTAATTTGGAGTCCGATCCTCACGTAAAGCCATCGGGTAGTTCGTCTCCGCCGCCTTCTGCCCCTCCTCTTTCCGCCGCGACGGGTGCCGCACCAATAGCTCCTCCTCCATCCACTGACGCGATGTCATCAATCGCGTCCATTGAGAATAAAGCCTCACCGGAAAATCCTCCGCCGCAGCTAGGAGAGGAACCGGGCAGAACTACCCTAACTGGAAACTCCGGCAGCAGCAACGCTAGCGTATTGGCTAGCTTGTTTGCTTCCTCCGCCGCATCGCTGAGCTTACAGCCGCCGCAGCCACCTGCATTTTGCGACTTATTACGAGCCATGGCGCGGCCTGATCGGGCGGCTGAAATTGCACCGCCGTTGGTTTTTGAACCTCTTTCGCTGTGCCTATCGACTGACACCGAATCGTCACTTTTTCGAGCTGGAATCCAAGAGTGCCGCCCATATGTGCCACCGACACCGCCGTCCATGTCCGCCACCGGACTCCTACAGAAGGCGGCTCAAATGGGCGCTGCAGCGGCGGGCGCATCAGTGTTTCGTGGACTTGGTTTATCGTCTTCCTCTTCTTCTGCACAACAGGGGAGTTTATAA 1206 53.48 MPTDLENSSNASGEVSISSTGNQPPPPKSAVKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVKKKVYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVKSDWKAHSKICGTREYKCDCETVFSRRDSFITHRAFCDALTKEVAGSLSPAAAENPNLESDPHVKPSGSSSPPPSAPPLSAATGAAPIAPPPSTDAMSSIASIENKASPENPPPQLGEEPGRTTLTGNSGSSNASVLASLFASSAASLSLQPPQPPAFCDLLRAMARPDRAAEIAPPLVFEPLSLCLSTDTESSLFRAGIQECRPYVPPTPPSMSATGLLQKAAQMGAAAAGASVFRGLGLSSSSSSAQQGSL 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 23916596 23922727 - ClCG07G009020.1 Cla07g00857 276845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00857 401 MobiDBLite consensus disorder prediction 199 278 - -
Cla07g00857 401 PANTHER ZINC FINGER PROTEIN GAI-ASSOCIATED FACTOR 1 1 396 - -
Cla07g00857 401 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 396 - -
Cla07g00857 401 SMART c2h2final6 61 83 IPR013087 -
Cla07g00857 401 SMART c2h2final6 137 157 IPR013087 -
Cla07g00857 401 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Cla07g00857 401 Pfam Zinc finger, C2H2 type 61 83 IPR013087 -
Cla07g00857 401 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Cla07g00857 401 MobiDBLite consensus disorder prediction 243 257 - -
Cla07g00857 401 Gene3D Classic Zinc Finger 41 108 - -
Cla07g00857 401 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Cla07g00857 401 MobiDBLite consensus disorder prediction 1 26 - -
Cla07g00857 401 MobiDBLite consensus disorder prediction 1 44 - -
Cla07g00857 401 Gene3D Classic Zinc Finger 130 191 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g01891 Cla07g00857 CCT
Cla01g01891 Cla07g00857 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00857 Cla-Chr7:23916596 Cla08g01505 Cla-Chr8:27861370 3.39E-117 dispersed
Cla07g00857 Cla-Chr7:23916596 Cla01g01891 Cla-Chr1:33706688 3.08E-165 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61419 PF00096 zf-C2H2 0.0038 CL0361 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00857 K25869 - csv:101215476 615.15