Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla07g00857 | ATGCCAACGGACTTAGAAAATTCCTCCAACGCTTCTGGCGAAGTCAGTATCTCCTCCACTGGCAATCAGCCTCCGCCGCCCAAATCCGCCGTGAAAAAAAAGCGTAATTTACCCGGAATGCCAGATCCGGATGCAGAGGTAATTGCTCTGTCTCCGAAGACCCTTTTGGCTACAAATCGATTTGTGTGTGAAATTTGCAACAAAGGGTTTCAAAGAGATCAGAATCTGCAACTTCACCGGCGAGGTCACAATCTTCCATGGAAACTCCGGCAACGGACTAGCAAAGAGGTGAAAAAGAAAGTCTATGTCTGCCCGGAGCCGTCGTGCGTCCACCACCATCCGTCGAGAGCTCTCGGCGATCTGACCGGAATAAAGAAGCACTTCTGCCGGAAGCACGGCGAGAAGAAGTGGAAGTGCGAAAAGTGCTCTAAGAAATATGCAGTCAAGTCCGATTGGAAGGCTCATTCTAAGATTTGTGGCACCAGAGAGTACAAATGCGACTGTGAGACTGTGTTTTCGAGAAGAGATAGTTTCATCACTCACAGAGCCTTCTGTGATGCGTTGACGAAGGAGGTTGCTGGAAGTTTGTCTCCAGCGGCGGCGGAGAATCCTAATTTGGAGTCCGATCCTCACGTAAAGCCATCGGGTAGTTCGTCTCCGCCGCCTTCTGCCCCTCCTCTTTCCGCCGCGACGGGTGCCGCACCAATAGCTCCTCCTCCATCCACTGACGCGATGTCATCAATCGCGTCCATTGAGAATAAAGCCTCACCGGAAAATCCTCCGCCGCAGCTAGGAGAGGAACCGGGCAGAACTACCCTAACTGGAAACTCCGGCAGCAGCAACGCTAGCGTATTGGCTAGCTTGTTTGCTTCCTCCGCCGCATCGCTGAGCTTACAGCCGCCGCAGCCACCTGCATTTTGCGACTTATTACGAGCCATGGCGCGGCCTGATCGGGCGGCTGAAATTGCACCGCCGTTGGTTTTTGAACCTCTTTCGCTGTGCCTATCGACTGACACCGAATCGTCACTTTTTCGAGCTGGAATCCAAGAGTGCCGCCCATATGTGCCACCGACACCGCCGTCCATGTCCGCCACCGGACTCCTACAGAAGGCGGCTCAAATGGGCGCTGCAGCGGCGGGCGCATCAGTGTTTCGTGGACTTGGTTTATCGTCTTCCTCTTCTTCTGCACAACAGGGGAGTTTATAA | 1206 | 53.48 | MPTDLENSSNASGEVSISSTGNQPPPPKSAVKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVKKKVYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVKSDWKAHSKICGTREYKCDCETVFSRRDSFITHRAFCDALTKEVAGSLSPAAAENPNLESDPHVKPSGSSSPPPSAPPLSAATGAAPIAPPPSTDAMSSIASIENKASPENPPPQLGEEPGRTTLTGNSGSSNASVLASLFASSAASLSLQPPQPPAFCDLLRAMARPDRAAEIAPPLVFEPLSLCLSTDTESSLFRAGIQECRPYVPPTPPSMSATGLLQKAAQMGAAAAGASVFRGLGLSSSSSSAQQGSL | 401 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 23916596 | 23922727 | - | ClCG07G009020.1 | Cla07g00857 | 276845 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla07g00857 | 401 | MobiDBLite | consensus disorder prediction | 199 | 278 | - | - | |
Cla07g00857 | 401 | PANTHER | ZINC FINGER PROTEIN GAI-ASSOCIATED FACTOR 1 | 1 | 396 | - | - | |
Cla07g00857 | 401 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 1 | 396 | - | - | |
Cla07g00857 | 401 | SMART | c2h2final6 | 61 | 83 | IPR013087 | - | |
Cla07g00857 | 401 | SMART | c2h2final6 | 137 | 157 | IPR013087 | - | |
Cla07g00857 | 401 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 61 | 83 | IPR013087 | - | |
Cla07g00857 | 401 | Pfam | Zinc finger, C2H2 type | 61 | 83 | IPR013087 | - | |
Cla07g00857 | 401 | SUPERFAMILY | beta-beta-alpha zinc fingers | 60 | 157 | IPR036236 | - | |
Cla07g00857 | 401 | MobiDBLite | consensus disorder prediction | 243 | 257 | - | - | |
Cla07g00857 | 401 | Gene3D | Classic Zinc Finger | 41 | 108 | - | - | |
Cla07g00857 | 401 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 63 | 83 | IPR013087 | - | |
Cla07g00857 | 401 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Cla07g00857 | 401 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - | |
Cla07g00857 | 401 | Gene3D | Classic Zinc Finger | 130 | 191 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cla01g01891 | Cla07g00857 | CCT | |
Cla01g01891 | Cla07g00857 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla07g00857 | Cla-Chr7:23916596 | Cla08g01505 | Cla-Chr8:27861370 | 3.39E-117 | dispersed | |
Cla07g00857 | Cla-Chr7:23916596 | Cla01g01891 | Cla-Chr1:33706688 | 3.08E-165 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61419 | PF00096 | zf-C2H2 | 0.0038 | CL0361 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla07g00857 | K25869 | - | csv:101215476 | 615.15 |