Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00859 ATGTCCTTCTCCATCTCCACCCGCCACATCCGTCGCCTATCTACGGCAGCCACCGCCGCCGCCAACGCAACGGCAACGACTTCCTCTTCAATATCCATTTCAAAAGCGAAATCTAAATTAAGAACCGAGTATGATCCAGATAAAGCCCTCGACATTTACTCTTCTGTTTCCAGTCACTACACCTCCCCTGTCTCTTCTCGTTACGCTCAGGAGATAACCATCCGGCGCCTTGCAAAGTCTCGTCGGTTCGACGACATCGAATCCCTAATCGAGTCCCATAAAAACGACCCGAAGATCACTCAGGAGCCATTTTTGTCCACCCTGATTCGATCCTATGGTCGAGCTGGTATGCTCGAGCACGCTATGAGGACTTATAATCAGATGGGGGATTTAGGTACTCCTCGATCCGCGATTTCCTTTAATGCCCTGTTATCTGCTTGTAACCTTTCGAAGCAATTCGACAAGGTTCCTCAACTGTTCGACGAAATTCCCAAGAAATATAATTTCTCTCCCAATAAGATCTCGTACGGGATCCTGGTTAAATCCTATTGCGACGCCGGTTCCCCCGAGAAGGCCATGCAGATTGTTAGACAGATGGAGGAAAATGGCGTGGAGGTAACTGCTGTGACATTCACAACCATTTTAGATGCTCTGTACAAGAAGGGTGAGAGCGAAGAGGCAGAGAAAATCTGGGAGCAGATGATATCAAAAGGGTGTGAACTTGATGTGGGAGCCTATAATGTTAGACTGATGCACAAGCATGGTGGCAAGCCTGAGCATGTGCAAGCTTTAATCGAGGAAATGGCTAATTCAGGTTTGAAACCAGACACAATTAGTTATAATTACTTGATGACTTGTTATTGTAAGAATGGGATGATTGATGAAGCAAAGAAGGTGTATGATGATATGGAGGCAAATGGGTGTAAAATGAATGCTGCAACTTTTAGGACATTTATATATTATCTCTGTAGAAATGGGGAGTATGAGAAAGGGTATAAGGTTTTCAAGGAGAGTGTGAAGATGCATAAGATTCCTGATTTTAACACACTGAAGTATTTGGTGGAGGGGCTGGTGGAGAAGAAGAAGATGAAAGAAGCTAAGGGTTTAATAAGGACTATAAGGAAGAAGTTCCCTCCTGACTCTTTGAAGGCTTGGAGAAAAGTTGAGGAGAGTCTTGGTTTGGCTTCTGCTGCTGATGATGCTTCTTCTAAGGATGATGAAACTAAAACATGA 1233 44.44 MSFSISTRHIRRLSTAATAAANATATTSSSISISKAKSKLRTEYDPDKALDIYSSVSSHYTSPVSSRYAQEITIRRLAKSRRFDDIESLIESHKNDPKITQEPFLSTLIRSYGRAGMLEHAMRTYNQMGDLGTPRSAISFNALLSACNLSKQFDKVPQLFDEIPKKYNFSPNKISYGILVKSYCDAGSPEKAMQIVRQMEENGVEVTAVTFTTILDALYKKGESEEAEKIWEQMISKGCELDVGAYNVRLMHKHGGKPEHVQALIEEMANSGLKPDTISYNYLMTCYCKNGMIDEAKKVYDDMEANGCKMNAATFRTFIYYLCRNGEYEKGYKVFKESVKMHKIPDFNTLKYLVEGLVEKKKMKEAKGLIRTIRKKFPPDSLKAWRKVEESLGLASAADDASSKDDETKT 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 23972578 23973810 + ClCG07G009040.1 Cla07g00859 276847

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00859 410 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 311 345 IPR002885 -
Cla07g00859 410 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 7 400 - -
Cla07g00859 410 Gene3D Tetratricopeptide repeat domain 252 410 IPR011990 GO:0005515
Cla07g00859 410 PANTHER BNAA09G52830D PROTEIN 7 400 - -
Cla07g00859 410 Pfam PPR repeat 106 132 IPR002885 -
Cla07g00859 410 Pfam PPR repeat 138 166 IPR002885 -
Cla07g00859 410 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 172 206 IPR002885 -
Cla07g00859 410 TIGRFAM PPR: pentatricopeptide repeat domain 209 243 IPR002885 -
Cla07g00859 410 TIGRFAM PPR: pentatricopeptide repeat domain 314 342 IPR002885 -
Cla07g00859 410 TIGRFAM PPR: pentatricopeptide repeat domain 278 312 IPR002885 -
Cla07g00859 410 TIGRFAM PPR: pentatricopeptide repeat domain 106 132 IPR002885 -
Cla07g00859 410 TIGRFAM PPR: pentatricopeptide repeat domain 138 172 IPR002885 -
Cla07g00859 410 TIGRFAM PPR: pentatricopeptide repeat domain 174 207 IPR002885 -
Cla07g00859 410 SUPERFAMILY TPR-like 276 380 IPR011990 GO:0005515
Cla07g00859 410 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 207 241 IPR002885 -
Cla07g00859 410 Pfam PPR repeat 169 200 IPR002885 -
Cla07g00859 410 Pfam PPR repeat family 208 248 IPR002885 -
Cla07g00859 410 Pfam PPR repeat family 275 324 IPR002885 -
Cla07g00859 410 Gene3D Tetratricopeptide repeat domain 152 251 IPR011990 GO:0005515
Cla07g00859 410 Gene3D Tetratricopeptide repeat domain 6 151 IPR011990 GO:0005515
Cla07g00859 410 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 276 310 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00859 - - - cmos:111435912 683.33
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00453 Cla-Chr3:5115831 Cla07g00859 Cla-Chr7:23972578 7.18E-70 dispersed
Cla07g00859 Cla-Chr7:23972578 Cla07g01217 Cla-Chr7:29141986 1.30E-67 dispersed
Cla07g00859 Cla-Chr7:23972578 Cla08g00621 Cla-Chr8:18186900 1.35E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g942 . . . . . Bpe13g00453 . . . Cmo16g00710 . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1611 Cone9ag1539 . . Chy07g01284 . . . Bda11g01875 . . . . Bma06g00129 . . . Cma16g00653 . . . . Cpe14g00557 . . . . . . . Cla07g00859 Cam07g0931 Cec07g0996 Cco07g0972 Clacu07g0905 Cmu07g0905 Cre07g1273 Lsi07g00214 Csa04g00517 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012727 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla07g00859 Cla_Chr07 FPKM 13.901282 14.058953 14.208473 13.305177 10.084392 9.03261 10.178777 4.189964 4.630154 4.484418
Cla07g00859 Cla_Chr00 FPKM 16.998228 19.079243 19.98542 18.760502 13.320965 11.756886 12.983373 29.434713 29.710421 31.094744
Cla07g00859 Cla_Chr00 FPKM 18.79402 23.523735 16.894688 15.040092 12.538619 10.593709 12.888064 30.776546 30.595417 29.053703