Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00866 ATGGCTGTAGAGGAGAAACCAAGAGCCGATAATTCCGCAGAGTCCCCGACTTCGGTTCTGGAAGACGAGGACTTATGTAATGGGGAAAAGGAGATCAAGTTGGAGGAAGAGATAATTTTGGAAGCAAAAAATGGGGATTCCAGTCTTATATCAAAAAAAATGGCTGAGGAGGAACAGAAATTGCTGGAAGCTCGAGTTAAGGAAGAGGAGGCAAAAAGACTTGAGGATTCAACAGAATCTGCAAAGTTGAATGACAATCAGTTCACCAAATTGGATGAACTTCTCACTCAAACACAGTTATACTCAGAATTTTTGTTGGAGAAAATGGATGACATCACATTTAATGGAGTGGAGGAAGATAAGAAATCTGTTGAGAAAAGTAGTGGGCGTGGTTCAAAGAGGAAAACTGCTGCTCGTTATAATAATAGGAAGGCGAAAAGGGCTGTTGCAGCTATGCTGACTAGATCAAAAGAAGGTGAGCGGGATGAAGATGTAAACTTGACCGAGGAAGAAAGAATTGAGAAGGAGCAGAGTGAACTTGTACCTCTATTGACTGGTGGCAAGTTGAAGTCCTACCAACTCAAAGGTGTCAAATGGTTGATTTCGTTATGGCAGAATGGGCTGAATGGAATCCTTGCAGATCAAATGGGGCTTGGTAAGACAATTCAAACCATTGGCTTCCTTGCACATTTGAAGGGGAAGGGACTGGATGGACCTTACTTAGTAATTGCTCCTCTTTCCACACTTTCAAATTGGATAAATGAAATATCGAGATTTGTGCCCACCATGAGTGCTATTATTTATCATGGTGATAAAAAACAAAGGGAAGAGATTCGAAGAAAGTCCATGCCTAGAACAGTTGGACCTAAATTCCCCATAGTGGTTACTTCTTATGAGATTGCAATGAGTGATGCTAAAAAATTTTTGAGGCATTACAATTGGAAATATCTTGTCGTTGATGAGGGACATAGACTGAAAAACTCAAAATGCAAATTGCTGAAGGAGTTGAAGTACATAGCTGTTGAAAATAAACTGCTTCTAACTGGGACACCACTGCAGAATAATTTGGCAGAGCTTTGGTCATTGTTGAACTTTATTTTACCAGATATTTTCTCGTCCAATGAGGAATTTGAGTCATGGTTTGATCTCTCTGGAAAGTGTCATGCCGAGGAAAAAGAAGAAACACAAGAGAATAGAAAGGCCCAGGTGGTAGCAAAACTGCATGGAATACTGAGACCATTCTTACTTCGGAGAATGAAATCTGATGTTGAGCTAATGCTCCCTCGGAAGAAAGAAATCATAATGTATGCAAACATGACCGAATATCAGAAGAACTTTCAGGAACATTTAGTTAACAAGACATTGGAAAATCATCTCTCTGAGAAGGGATCAGGACATGGTTTTAAAGGAAAACTTAACAATCTGATGGTCCAGCTTCGGAAAAATTGCAACCATCCTGATCTCTTGGAATCAGTCTTTGATGAATCCTATACGTATCCTCCTGTAGAGCAGCTAGTTGAGCAGTGTGGAAAATTTTGCTTACTGGATAGATTGTTGACACGACTATTTGCACGCAAGCATAAAGTCCTTATTTTCTCGCAATGGACTAAGATTTTGGATATCATGGACTACTATTTTAGTGAGAAGGGATTTGAAGTTTGCAGAATAGATGGTGGCGTGAAACTAGATGAAAGGAAAAGACAGGTGCCAAAATGTTGCAGTATGATGTCAATTTCGGAAATTGTTGTACCAAAGAACTACGTTCCATATGATGCATGCCTCAATCAGGTCACCTCACCTGATCCCGGCAAGATTCCTAAGATCCAGGAGTTCAATGATGTTAACAGCAGCCACAGGATATTTATTCTTAGTACCCGGGCTGGTGGTCTGGGTATCAACCTCACTGCAGCAGATACTTGTATACTCTATGATAGCGATTGGAACCCACAAATGGATTTGCAGGCCATGGATAGGTGTCACAGGATAGGTCAAACGAAACCTGTACACGTTTACAGACTTGCAACAGCTCAGTCTATAGAGGGCCGCATTCTGAAGAGGGCCTTTAGTAAGTTGAAGCTAGAGCATGTGGTCATTGAAAAGGGGCAATTTCACCAGGAACGAACAAAACCCAACCCTGGAGATATTGTAGAGGAAGAGGATCTACTAGCACTACTAAGAGAGGAAGATTCTGCTGAAGACAAGATGATACAGACAGACATTAGCGATGCTGATTTGGAGCGTATTTTAGACCGCTCTGATCTGATTGCGCCATCTGGTTCAGACAATGAGAAATCTAAAGTTTCTGGCGATTTATACCCTCTGAAAGGGCCTGGTTGGGAGGTGGTGACACCAACTTCAACAGGAGGGGTACTCTCTACCCTTAACTCTTAA 2391 41.36 MAVEEKPRADNSAESPTSVLEDEDLCNGEKEIKLEEEIILEAKNGDSSLISKKMAEEEQKLLEARVKEEEAKRLEDSTESAKLNDNQFTKLDELLTQTQLYSEFLLEKMDDITFNGVEEDKKSVEKSSGRGSKRKTAARYNNRKAKRAVAAMLTRSKEGERDEDVNLTEEERIEKEQSELVPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLAHLKGKGLDGPYLVIAPLSTLSNWINEISRFVPTMSAIIYHGDKKQREEIRRKSMPRTVGPKFPIVVTSYEIAMSDAKKFLRHYNWKYLVVDEGHRLKNSKCKLLKELKYIAVENKLLLTGTPLQNNLAELWSLLNFILPDIFSSNEEFESWFDLSGKCHAEEKEETQENRKAQVVAKLHGILRPFLLRRMKSDVELMLPRKKEIIMYANMTEYQKNFQEHLVNKTLENHLSEKGSGHGFKGKLNNLMVQLRKNCNHPDLLESVFDESYTYPPVEQLVEQCGKFCLLDRLLTRLFARKHKVLIFSQWTKILDIMDYYFSEKGFEVCRIDGGVKLDERKRQVPKCCSMMSISEIVVPKNYVPYDACLNQVTSPDPGKIPKIQEFNDVNSSHRIFILSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSIEGRILKRAFSKLKLEHVVIEKGQFHQERTKPNPGDIVEEEDLLALLREEDSAEDKMIQTDISDADLERILDRSDLIAPSGSDNEKSKVSGDLYPLKGPGWEVVTPTSTGGVLSTLNS 796
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24057474 24066350 + ClCG07G009110.1 Cla07g00866 276854

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00866 796 CDD SF2_C_SNF 500 673 - -
Cla07g00866 796 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 514 716 IPR001650 -
Cla07g00866 796 Coils Coil 52 84 - -
Cla07g00866 796 PANTHER SNF2/RAD54 HELICASE FAMILY 12 570 - -
Cla07g00866 796 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 420 749 IPR027417 -
Cla07g00866 796 PANTHER SNF2/RAD54 HELICASE FAMILY 607 795 - -
Cla07g00866 796 Gene3D - 184 427 IPR038718 -
Cla07g00866 796 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 201 369 IPR014001 -
Cla07g00866 796 MobiDBLite consensus disorder prediction 1 23 - -
Cla07g00866 796 Gene3D - 428 570 IPR027417 -
Cla07g00866 796 SMART ultradead3 185 380 IPR014001 -
Cla07g00866 796 Pfam Helicase conserved C-terminal domain 518 663 IPR001650 -
Cla07g00866 796 PANTHER ATP-DEPENDENT DNA HELICASE DDM1-LIKE ISOFORM X1 12 570 - -
Cla07g00866 796 PANTHER ATP-DEPENDENT DNA HELICASE DDM1-LIKE ISOFORM X1 607 795 - -
Cla07g00866 796 Pfam SNF2-related domain 192 488 IPR000330 GO:0005524|GO:0140658
Cla07g00866 796 SMART helicmild6 540 663 IPR001650 -
Cla07g00866 796 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 418 IPR027417 -
Cla07g00866 796 Gene3D - 588 764 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00866 K19001 HELLS, DDM1; ATP-dependent DNA helicase - csv:101214753 1376.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00383 Cla-Chr4:14508475 Cla07g00866 Cla-Chr7:24057474 2.05E-37 dispersed
Cla06g00562 Cla-Chr6:6814928 Cla07g00866 Cla-Chr7:24057474 1.06E-130 dispersed
Cla07g00866 Cla-Chr7:24057474 Cla11g00070 Cla-Chr11:910202 7.47E-79 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g955 Blo04g00920 Blo16g00039 . . Bpe15g00433 Bpe13g00452 . . Cmo04g00837 Cmo16g00712 . . . . . . . . . . . . . . . . . . . . . Cone8ag0805 . . . . . Chy07g01291 . . . Bda11g01874 . . . Bma03g00992 Bma06g00128 . . . Cma16g00655 . . . . Cpe14g00559 . . . . . . . Cla07g00866 Cam07g0939 Cec07g1004 Cco07g0982 Clacu07g0912 Cmu07g0912 Cre07g1283 . Csa04g00510 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009588 2 0 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 0 1 1 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61421 PF00176 SNF2_N 2.90E-64 CL0023 Cla TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla07g00866 Cla_Chr07 FPKM 13.652369 18.715933 3.026067 2.497087 4.26839 3.74333 3.838949 0.273764 0.0 0.121507