Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00872 ATGGCGTATATGTGCGCAGACAGTGGCAATCTAATGGCAATTGCCCAACAACTCATCAACCAAAAACAACACCAACACCAAGACCAACATCAACATCTTTCTCCACTTACCACTCCTTTTTCTCTTCTTCCTTGCACTAATAACAATCCTTCCCCTTCCCCAACTATGGCTTCTTCTTCTTCTTCTCCTAATTTCTCCTTCGGGATTTCTGCTTCTGCTTTCTCTGATCCTTTTCAGGTCGCCGGACCCCCCGATTCTGCCGACCCATCTTTTCATTTCTCTAATTTGGACCACCCTTCTGCTGCCTTTAGGTTTTTCCCTAATTTTGGCGATGCCACCGGTGGAGAGTTTGAATCTGATGAGTGGATGGATAGTTTAGTAGGCGGTGGAGATTCCACGTATAGCTCAAATTTGCCGTCTGCTTGCGATGCTTATGGTGAGTTTGGTCTCTATGGTACAGATCCCTTTAATGGCTCTCCCAGAAGACTCACTGTCGCTTGCTCTCCGCCATCTGAGTTGATCAACCGAGTTGTTCTCCCGGAAAGTTCATACAAAATGAATAGTGTTCCGCCACCATGGCCATCATCTCCACAGTTGGTTAAGGATGATGGACCAACCAATCCACCGGTGGAGAGGTCGGTGAAGAATGATGACGTTGTTGAAGGCTCGTCGAGTGCGGAAGAGGTTGAGTCATCGTCGCCGCTTCTGAAAGTCTTGCTCGATTGTGCGCGGCTCTGCGATTCTGAACCCAACCGAGCAGCGAAAGGTCTTAATCGGATTAGTAAATCGTTACGAGAAGATGGAGATCCGGCTGAACGAGTGGCGTTTTACTTCGGCGAGGCTCTTCGGAAGAGATTATCCTTGACGGTGATGAAGAATTGCTTGGATACAACTGAGAGTGATGCTAATTCTGAAGATTTCTTGCTCTCTTACAAAGCTCTGAACGACGCCTGTCCTTACTCCAAGTTCGCGCATCTAACGGCCAACCAAGCAATTCTGGAAGCTACAGAGAGAGCAAGTAAAATTCACATTGTCGACTTCGGAATCGTTCAAGGCGTTCAATGGGCGGCGCTTCTGCAGGCTTTGGCCACGCGAGCCACTGGAAAGCCTAGCAGAGTTCGTATCTCCGGAATACCAGCGCCGTCGCTTGGAGATTCACCGGCAGCGTCCCTATACGCCACTGGCAATAGACTCTCCGAGTTCGCAAAGCTTCTAGAACTGAATTTCGAGTTCGAACCGATTCTAACGCCGATTGAGAACCTGAACGAATCGAGCTTTAGCGTTCAATCAGACGAGGTATTGGCCGTGAATTTCATGCTTCAATTGTATAATCTCCTCGACGAGGATCCAGCTGGAGTTCATAATGCTCTTCGATTAGCAAAATCGTTGAGCCCTCAAATAGTGACTCTCGGCGAGTACGAGGCGGGTTTGAACCGGATCGGATTCTACAATCGCTTCAAGAACGCATTGAAATTCTACTCCGCCATTTTCGAATCGCTAGAGCCGAATTTGCCTCGAGACTCGCCAGAAAGACTCCAGTTAGAAAAACTGTTACTCGGCCGTCGAATCGCCGGCGTGGTTGGAACCGAAGAAGATTCAAGAAACAAAAGAAGAGTACGCATGGAAGACAAAGATCAATGGAAGAATTTGATGGAAAGCGCCGGATTCGAACCTGTAGCACTCAGCCATTACGCCATTAGTCAGGGGAAAATACTTTTATGGAACTACAATTACAGTTCTCTCTACACTCTGATCGAATCGGCACCGGAGTTTCTGTCGCTGGCATGGAACGAAGTTCCTCTCTTAACTGTATCTTCCTGGCGTTGA 1827 48.0 MAYMCADSGNLMAIAQQLINQKQHQHQDQHQHLSPLTTPFSLLPCTNNNPSPSPTMASSSSSPNFSFGISASAFSDPFQVAGPPDSADPSFHFSNLDHPSAAFRFFPNFGDATGGEFESDEWMDSLVGGGDSTYSSNLPSACDAYGEFGLYGTDPFNGSPRRLTVACSPPSELINRVVLPESSYKMNSVPPPWPSSPQLVKDDGPTNPPVERSVKNDDVVEGSSSAEEVESSSPLLKVLLDCARLCDSEPNRAAKGLNRISKSLREDGDPAERVAFYFGEALRKRLSLTVMKNCLDTTESDANSEDFLLSYKALNDACPYSKFAHLTANQAILEATERASKIHIVDFGIVQGVQWAALLQALATRATGKPSRVRISGIPAPSLGDSPAASLYATGNRLSEFAKLLELNFEFEPILTPIENLNESSFSVQSDEVLAVNFMLQLYNLLDEDPAGVHNALRLAKSLSPQIVTLGEYEAGLNRIGFYNRFKNALKFYSAIFESLEPNLPRDSPERLQLEKLLLGRRIAGVVGTEEDSRNKRRVRMEDKDQWKNLMESAGFEPVALSHYAISQGKILLWNYNYSSLYTLIESAPEFLSLAWNEVPLLTVSSWR 608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24281159 24282985 + ClCG07G009170.2 Cla07g00872 276860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00872 608 ProSiteProfiles GRAS family profile. 226 608 IPR005202 -
Cla07g00872 608 MobiDBLite consensus disorder prediction 22 60 - -
Cla07g00872 608 MobiDBLite consensus disorder prediction 185 228 - -
Cla07g00872 608 Pfam GRAS domain family 236 608 IPR005202 -
Cla07g00872 608 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 236 607 IPR005202 -
Cla07g00872 608 PANTHER SCARECROW-LIKE PROTEIN 4-RELATED 236 607 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g01901 Cla07g00872 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00872 Cla-Chr7:24281159 Cla11g00724 Cla-Chr11:10282118 6.01E-63 dispersed
Cla03g01242 Cla-Chr3:26710493 Cla07g00872 Cla-Chr7:24281159 4.64E-46 transposed
Cla06g00286 Cla-Chr6:3679742 Cla07g00872 Cla-Chr7:24281159 7.12E-33 transposed
Cla08g00575 Cla-Chr8:17431214 Cla07g00872 Cla-Chr7:24281159 3.21E-42 transposed
Cla10g00261 Cla-Chr10:3189905 Cla07g00872 Cla-Chr7:24281159 8.95E-33 transposed
Cla01g01901 Cla-Chr1:33774464 Cla07g00872 Cla-Chr7:24281159 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61422 PF03514 GRAS 4.70E-108 CL0063 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00872 - - csv:101211368 927.546