Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00878 ATGGTGCACAGTGCTTACGATTCCTTCGAGCTACTCAAGGATAATCCCTCCAAAATCGAATCTATCGAGTCTTACGGCTCCAAGCTTTTCATCGGTTGTTCAGATGGATCTCTTCGTATTTACTCCCCTAATTCCTCCGGTTCCGACCGCTCTCCGTCGTCTGATTTCCACTCCAAATCGATGGAGTTGCAAAAGGAACCATATGTATTGGAGAAGAACGTGTCCGGGTTCTCCCGGCGGTCTTTGGTGTCAATGGAGGTAATTGATTCGAGAGAGCTTCTTTTGACTCTCTCTGAATCAATCGCCTTTCACAAACTTCCCAATTTGGAGACTCTTGCCGTAATTACCAAGGCCAAGGGTGCCAATGCCTATTCCTGGGATGATCGCCGAGGCTTCTTGTGCTTCGCGAGGCAAAAGAGGGTCTGTATTTTCAGACACGACGGGGGACGAGGATTCGTGGAGGTTAAAGAATTTGGTGTCCCTGACACAGTGAAGTCAATGTCTTGGTGTGGAGAAAATATATGTTTGGGAATTAAAAGAGAATACGTGATATTAAATGCTACCAGCGGTGCGTTGACTGATGTGTTTCCTTCTGGGAGGCTAGCCCCGCCTTTGGTTGTCTCCTTACCTTCTGGAGAACTTCTTCTTGGAAAGGATAACATTGGTGTTTTCGTGGACCAAAATGGGAAACTGCTTCAAGAAGGTCGGATTTGTTGGTCAGAGGCTCCTTCTGTCGTTGTCATACAGAATCCCTATGCAGTTGCTTTGTTGCCAAGATATATTGAGATTCGGTCTCTCCGGTCTCCATATGCGTTGATACAAACCATTGTCCTTCGAAATGGTCGGCATCTTATTGACAGTAAGCATGCCCTGGTTGTTGGATTAGACAATTCTGCTTATGGCCTCTTTCCTGTTCCTCTTGGTGCACAGATTGTACAATTAACAGCATCTGGTAACTTTGAGGAAGCGTTGGCTCTGTGCAAGTTGCTTCCTCCTGAAGATTCAAGCCTTCGATCTGCAAAGGAGAGTTCAATCCATATCAGGCAGCAGCCATCCTCCTCCCAGCATATGCTCACAGTGAAGTTTTTAGATATCATGTTATTTAGCTCATATGCTCACTATCTTTTTGATAATGGGAGCTATGAGGAGGCAATGGAACATTTTTTGGCATCTCAAGTGGATATAACCTATGTGCTTCCCTTTTATCCTTCAATTGTCCTTCCGAAGACAACTTTGATTACTGAAACAGAGAAATTGATGGATTTGGATGATCCTCATCTTTCAAGAGGTTCTTCAGGTTTTTCTGATGACATGGAGTCACCTCCACACCAGCTACTGGAATCTGATGAGAACACGTCACTTGAGTCAAAAAAAATGAACCATAATACTCTCATGGCTCTAATCAAGTTCTTGCAGAAGAAAAGGCACAACATTATTGAAAAGGCTACTGCTGAAGGGACAGAAGAGGTAGTTTTAGATGCTGTTGGAGACCGATATAAAAAATCTTATAAGGGACGAGGGAACATCCCTGTCAGCTCCGGTGCTAGGGAGATGGCAGCTATACTGGATACAGCACTACTTCAAGCTCTGCTTTTTACTGGACAATCATTTGCGGCTTTGGAATTATTAAAAGGCCTGAATTACTGTGATGTAAAAATATGTGAAGAGATCCTTCAGAAAAATAAACATTACTCCGCACTGTTAGAGTTGTATAGGTGCAATTCTATGCATCGTGAAGCTCTAAAACTTTTGCATCAATTAGTAGAAGAGTCAAAAGCCAATGAGTCTCAAACTGAACTTATCCAAAAGTTCAAACCTGAAATGATCATTGACTATCTTAAGGCACAGTTAAGTAACCTAGAATATCATGTGATTAATAATTTGAAACTTAAGATTCCAGTTGTGAGCTTCTGGTGCGACCGTGATTCCATATTTACTATGGGTGTGCCACTTTGTGGAACTGATCCCATGCTGGTCCTGGAATTTTCGATGACCGTTCTTGAAAGCTGTCCCACGCAAACTATTGAGCTCTTTCTGTCAGGAAATATTCCTGCAGACTTGGTCAATTCCTATTTGAAGCAACATGCTCCGAACTTGCAGGCAACATATTTGGAACTTATGCTTGCAATGAACGAGAGTTCAATTTCTGGAAATCTCCAAAATGAAATGCTTCAAATGTATCTTTCGGAAGTTCTTGACTGGTATGCAGATTTAAGTGCTCAACATACATGGGACGAAAAAACTTACTCCTCCACAAGAAAGAAGTTGTTGTCTGCTTTGGAGTCAATCTCAGGGTATCAGCCGGAGGTTCTATTAAAACGCCTTCCTTCAGATGCATTATCTGAAGAACGAGCAATTTTATTGGGGAAGATGAACCAGCACGAGCTTGCCTTATCTCTCTATGTTCATAAGATCCATGTGCCTGAGTTGGCACTGTCCTACTGTGATCGGGTTTATGAATCTGTAGCTAACCAGCAACCAACAAAATCTTCTGGCAATATATACCTGACTCTTCTACAAATATACCTCAACCCCCGCAGAACAACAAAAAATTTTGAGAAGAGAATAACTAACTTAACATCTCCTCAAAATACGGGCACTCCAAAACTTGGGTCAGGTCCTTCATTCAGGGTTAAAGGAGGCCGTGCAGCTAAGAAAATTGCTGCAATAGAAGGTGCAGAAGACACGAAAATTAGTCTTTGTAACACTGACAGTAACCGGAGTGATGGTGACACAGATGAACCTGGTGAAGAAGGAAGCTCTTCAATTATGCTTGATGAAGCTCTGGATCTGTTGAGCCAAAGGTGGGACAGAATTAATGGAGCACAGGCACTCAAACTTTTACCTAAGGAAACAAAGTTACAGAACTTGCTTCAATTTATTGGACCACTTTTGAGGAAATCCAGTGAGGCGTACAGGAACTCTTCAGTGATAAAGAGTTTGCGACAAAGTGAAAACTTGCAGGTGAGAGATGAACTATATAACCATAGGAAGCCTGCTATAAAAATAACCAGTGATAGCATGTGCTCCCTTTGCAAGAAGAAAATAGGGACGAGCGTTTTTGCTGTCTATCCGAACGGGAAAACACTTGTGCACTTTGTGTGCTTTAGAGACTCACAGAACATGAAGGCTGTGTCCAAGGATTCACCCATAAGGAGGCGTACATAA 3168 42.55 MVHSAYDSFELLKDNPSKIESIESYGSKLFIGCSDGSLRIYSPNSSGSDRSPSSDFHSKSMELQKEPYVLEKNVSGFSRRSLVSMEVIDSRELLLTLSESIAFHKLPNLETLAVITKAKGANAYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKEFGVPDTVKSMSWCGENICLGIKREYVILNATSGALTDVFPSGRLAPPLVVSLPSGELLLGKDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQNPYAVALLPRYIEIRSLRSPYALIQTIVLRNGRHLIDSKHALVVGLDNSAYGLFPVPLGAQIVQLTASGNFEEALALCKLLPPEDSSLRSAKESSIHIRQQPSSSQHMLTVKFLDIMLFSSYAHYLFDNGSYEEAMEHFLASQVDITYVLPFYPSIVLPKTTLITETEKLMDLDDPHLSRGSSGFSDDMESPPHQLLESDENTSLESKKMNHNTLMALIKFLQKKRHNIIEKATAEGTEEVVLDAVGDRYKKSYKGRGNIPVSSGAREMAAILDTALLQALLFTGQSFAALELLKGLNYCDVKICEEILQKNKHYSALLELYRCNSMHREALKLLHQLVEESKANESQTELIQKFKPEMIIDYLKAQLSNLEYHVINNLKLKIPVVSFWCDRDSIFTMGVPLCGTDPMLVLEFSMTVLESCPTQTIELFLSGNIPADLVNSYLKQHAPNLQATYLELMLAMNESSISGNLQNEMLQMYLSEVLDWYADLSAQHTWDEKTYSSTRKKLLSALESISGYQPEVLLKRLPSDALSEERAILLGKMNQHELALSLYVHKIHVPELALSYCDRVYESVANQQPTKSSGNIYLTLLQIYLNPRRTTKNFEKRITNLTSPQNTGTPKLGSGPSFRVKGGRAAKKIAAIEGAEDTKISLCNTDSNRSDGDTDEPGEEGSSSIMLDEALDLLSQRWDRINGAQALKLLPKETKLQNLLQFIGPLLRKSSEAYRNSSVIKSLRQSENLQVRDELYNHRKPAIKITSDSMCSLCKKKIGTSVFAVYPNGKTLVHFVCFRDSQNMKAVSKDSPIRRRT 1055
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24367752 24380209 + ClCG07G009230.2 Cla07g00878 276866

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00878 1055 Pfam Region in Clathrin and VPS 687 817 IPR000547 GO:0006886|GO:0016192
Cla07g00878 1055 ProSiteProfiles Citron homology (CNH) domain profile. 16 291 IPR001180 -
Cla07g00878 1055 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 675 851 IPR000547 GO:0006886|GO:0016192
Cla07g00878 1055 PANTHER CNH DOMAIN CONTAINING 370 622 IPR032914 GO:0016192
Cla07g00878 1055 SUPERFAMILY WD40 repeat-like 11 215 IPR036322 GO:0005515
Cla07g00878 1055 Pfam Vacuolar sorting protein 39 domain 2 929 1037 IPR019453 -
Cla07g00878 1055 PANTHER VACUOLAR SORTING PROTEIN 39 370 622 - -
Cla07g00878 1055 PANTHER VACUOLAR SORTING PROTEIN 39 1 348 - -
Cla07g00878 1055 PANTHER CNH DOMAIN CONTAINING 644 1054 IPR032914 GO:0016192
Cla07g00878 1055 MobiDBLite consensus disorder prediction 423 453 - -
Cla07g00878 1055 PANTHER CNH DOMAIN CONTAINING 1 348 IPR032914 GO:0016192
Cla07g00878 1055 Pfam CNH domain 28 283 IPR001180 -
Cla07g00878 1055 MobiDBLite consensus disorder prediction 899 921 - -
Cla07g00878 1055 Pfam Vacuolar sorting protein 39 domain 1 522 621 IPR019452 -
Cla07g00878 1055 PANTHER VACUOLAR SORTING PROTEIN 39 644 1054 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00878 K20183 VPS39, VAM6; Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39 - csv:101209397 1774.21
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g968 . Blo16g00043 . . . Bpe13g00446 . . Cmo04g00844 Cmo16g00721 . . . . . . . . . . . . . . . . . . . . . Cone8ag0808 . . . . . Chy07g01300 . . . Bda11g01869 . . . . Bma06g00123 . . . Cma16g00663 . . . . Cpe14g00567 . . . . . . . Cla07g00878 Cam07g0950 Cec07g1016 Cco07g0995 Clacu07g0925 Cmu07g0924 Cre07g1293 Lsi07g00195 Csa04g00500 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008233 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 3 1 1 2 1 1 0 1 1 1 1 1 1 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla07g00878 Cla_Chr07 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0