Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla07g00885 | ATGAGCGGCCACAAACGAAACTTCACCACCACAGCCGCCGCCGTCAGTCCCATCGGCAGCCCCACCTCCGGCAACATCTCGGACAGCTCCACAAAAGAACAGGACAGGTTCCTTCCGATTGCAAACGTGAGCCGAATCATGAAAAAATCTCTTCCGGCGAACGCCAAAATCTCAAAAGAAGCAAAAGAGACCGTCCAGGAATGTGTGTCGGAATTCATCAGCTTCATCACCGGCGAGGCCTCCGACAAGTGCCAAAGGGAAAAACGGAAGACGATCAACGGAGACGATTTGTTGTGGGCGATGACTACTTTGGGATTCGAAAATTACGTCGGCCCTTTGAAGATTTATCTCAACAAATACAGAGAAACAGAGGAAGAGAAACATTCTTTAGCCAGACAGGACGATCCCTCCCTGTCTCCGGCGAAATCCGCCACCGAACAAATTATTGGTGGGAAATCGGCGAATTCGGTGATGGATTTTCAGAATTTCAATCCTGGGTTTTATTCATTTGGAAATCAAAATCAAAATCAGGGGAACCAGAAGAGTTTCAATATAATCGATGGCGTTGGATTTGGGGAAAGTTTGAGGAGTTTCAATATGAATGGAGTCCATGAAAATGGAGAAGGGAATCGAGCTCGAGCTATGGCGGCTCATCTTCAACAGAGCTCTGGTTGGTGA | 678 | 47.64 | MSGHKRNFTTTAAAVSPIGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQDDPSLSPAKSATEQIIGGKSANSVMDFQNFNPGFYSFGNQNQNQGNQKSFNIIDGVGFGESLRSFNMNGVHENGEGNRARAMAAHLQQSSGW | 225 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 24476703 | 24477380 | - | ClCG07G009290.1 | Cla07g00885 | 276873 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla07g00885 | 225 | MobiDBLite | consensus disorder prediction | 127 | 146 | - | - | |
Cla07g00885 | 225 | SUPERFAMILY | Histone-fold | 34 | 136 | IPR009072 | GO:0046982 | |
Cla07g00885 | 225 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-11 | 18 | 185 | - | - | |
Cla07g00885 | 225 | PRINTS | CCAAT-binding transcription factor subunit A signature | 65 | 83 | - | - | |
Cla07g00885 | 225 | PRINTS | CCAAT-binding transcription factor subunit A signature | 84 | 102 | - | - | |
Cla07g00885 | 225 | PRINTS | CCAAT-binding transcription factor subunit A signature | 103 | 121 | - | - | |
Cla07g00885 | 225 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 37 | 101 | IPR003958 | - | |
Cla07g00885 | 225 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
Cla07g00885 | 225 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 68 | 84 | IPR003956 | GO:0005634|GO:0006355|GO:0043565 | |
Cla07g00885 | 225 | Gene3D | Histone, subunit A | 24 | 157 | IPR009072 | GO:0046982 | |
Cla07g00885 | 225 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 18 | 185 | IPR027113 | GO:0001228|GO:0006355|GO:0016602 | |
Cla07g00885 | 225 | Coils | Coil | 113 | 133 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla02g00899 | Cla-Chr2:12994920 | Cla07g00885 | Cla-Chr7:24476703 | 4.19E-63 | dispersed | |
Cla07g00885 | Cla-Chr7:24476703 | Cla10g00404 | Cla-Chr10:5486885 | 5.96E-56 | dispersed | |
Cla07g00885 | Cla-Chr7:24476703 | Cla02g01361 | Cla-Chr2:27936449 | 2.50E-50 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61423 | PF00808 | CBFD_NFYB_HMF | 6.70E-27 | CL0012 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla07g00885 | K08065 | - | csv:101214273 | 409.453 |