Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00885 ATGAGCGGCCACAAACGAAACTTCACCACCACAGCCGCCGCCGTCAGTCCCATCGGCAGCCCCACCTCCGGCAACATCTCGGACAGCTCCACAAAAGAACAGGACAGGTTCCTTCCGATTGCAAACGTGAGCCGAATCATGAAAAAATCTCTTCCGGCGAACGCCAAAATCTCAAAAGAAGCAAAAGAGACCGTCCAGGAATGTGTGTCGGAATTCATCAGCTTCATCACCGGCGAGGCCTCCGACAAGTGCCAAAGGGAAAAACGGAAGACGATCAACGGAGACGATTTGTTGTGGGCGATGACTACTTTGGGATTCGAAAATTACGTCGGCCCTTTGAAGATTTATCTCAACAAATACAGAGAAACAGAGGAAGAGAAACATTCTTTAGCCAGACAGGACGATCCCTCCCTGTCTCCGGCGAAATCCGCCACCGAACAAATTATTGGTGGGAAATCGGCGAATTCGGTGATGGATTTTCAGAATTTCAATCCTGGGTTTTATTCATTTGGAAATCAAAATCAAAATCAGGGGAACCAGAAGAGTTTCAATATAATCGATGGCGTTGGATTTGGGGAAAGTTTGAGGAGTTTCAATATGAATGGAGTCCATGAAAATGGAGAAGGGAATCGAGCTCGAGCTATGGCGGCTCATCTTCAACAGAGCTCTGGTTGGTGA 678 47.64 MSGHKRNFTTTAAAVSPIGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQDDPSLSPAKSATEQIIGGKSANSVMDFQNFNPGFYSFGNQNQNQGNQKSFNIIDGVGFGESLRSFNMNGVHENGEGNRARAMAAHLQQSSGW 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24476703 24477380 - ClCG07G009290.1 Cla07g00885 276873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00885 225 MobiDBLite consensus disorder prediction 127 146 - -
Cla07g00885 225 SUPERFAMILY Histone-fold 34 136 IPR009072 GO:0046982
Cla07g00885 225 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-11 18 185 - -
Cla07g00885 225 PRINTS CCAAT-binding transcription factor subunit A signature 65 83 - -
Cla07g00885 225 PRINTS CCAAT-binding transcription factor subunit A signature 84 102 - -
Cla07g00885 225 PRINTS CCAAT-binding transcription factor subunit A signature 103 121 - -
Cla07g00885 225 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 37 101 IPR003958 -
Cla07g00885 225 MobiDBLite consensus disorder prediction 1 33 - -
Cla07g00885 225 ProSitePatterns NF-YB/HAP3 subunit signature. 68 84 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cla07g00885 225 Gene3D Histone, subunit A 24 157 IPR009072 GO:0046982
Cla07g00885 225 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 18 185 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cla07g00885 225 Coils Coil 113 133 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00899 Cla-Chr2:12994920 Cla07g00885 Cla-Chr7:24476703 4.19E-63 dispersed
Cla07g00885 Cla-Chr7:24476703 Cla10g00404 Cla-Chr10:5486885 5.96E-56 dispersed
Cla07g00885 Cla-Chr7:24476703 Cla02g01361 Cla-Chr2:27936449 2.50E-50 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61423 PF00808 CBFD_NFYB_HMF 6.70E-27 CL0012 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00885 K08065 - csv:101214273 409.453