Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00885 ATGAGCGGCCACAAACGAAACTTCACCACCACAGCCGCCGCCGTCAGTCCCATCGGCAGCCCCACCTCCGGCAACATCTCGGACAGCTCCACAAAAGAACAGGACAGGTTCCTTCCGATTGCAAACGTGAGCCGAATCATGAAAAAATCTCTTCCGGCGAACGCCAAAATCTCAAAAGAAGCAAAAGAGACCGTCCAGGAATGTGTGTCGGAATTCATCAGCTTCATCACCGGCGAGGCCTCCGACAAGTGCCAAAGGGAAAAACGGAAGACGATCAACGGAGACGATTTGTTGTGGGCGATGACTACTTTGGGATTCGAAAATTACGTCGGCCCTTTGAAGATTTATCTCAACAAATACAGAGAAACAGAGGAAGAGAAACATTCTTTAGCCAGACAGGACGATCCCTCCCTGTCTCCGGCGAAATCCGCCACCGAACAAATTATTGGTGGGAAATCGGCGAATTCGGTGATGGATTTTCAGAATTTCAATCCTGGGTTTTATTCATTTGGAAATCAAAATCAAAATCAGGGGAACCAGAAGAGTTTCAATATAATCGATGGCGTTGGATTTGGGGAAAGTTTGAGGAGTTTCAATATGAATGGAGTCCATGAAAATGGAGAAGGGAATCGAGCTCGAGCTATGGCGGCTCATCTTCAACAGAGCTCTGGTTGGTGA 678 47.64 MSGHKRNFTTTAAAVSPIGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQDDPSLSPAKSATEQIIGGKSANSVMDFQNFNPGFYSFGNQNQNQGNQKSFNIIDGVGFGESLRSFNMNGVHENGEGNRARAMAAHLQQSSGW 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24476703 24477380 - ClCG07G009290.1 Cla07g00885 276873

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00885 225 MobiDBLite consensus disorder prediction 127 146 - -
Cla07g00885 225 SUPERFAMILY Histone-fold 34 136 IPR009072 GO:0046982
Cla07g00885 225 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-11 18 185 - -
Cla07g00885 225 PRINTS CCAAT-binding transcription factor subunit A signature 65 83 - -
Cla07g00885 225 PRINTS CCAAT-binding transcription factor subunit A signature 84 102 - -
Cla07g00885 225 PRINTS CCAAT-binding transcription factor subunit A signature 103 121 - -
Cla07g00885 225 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 37 101 IPR003958 -
Cla07g00885 225 MobiDBLite consensus disorder prediction 1 33 - -
Cla07g00885 225 ProSitePatterns NF-YB/HAP3 subunit signature. 68 84 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cla07g00885 225 Gene3D Histone, subunit A 24 157 IPR009072 GO:0046982
Cla07g00885 225 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 18 185 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cla07g00885 225 Coils Coil 113 133 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00885 K08065 NFYB, HAP3; nuclear transcription Y subunit beta - csv:101214273 409.453
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00899 Cla-Chr2:12994920 Cla07g00885 Cla-Chr7:24476703 4.19E-63 dispersed
Cla07g00885 Cla-Chr7:24476703 Cla10g00404 Cla-Chr10:5486885 5.96E-56 dispersed
Cla07g00885 Cla-Chr7:24476703 Cla02g01361 Cla-Chr2:27936449 2.50E-50 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla10g00422 . 13 177 CCAAT-HAP3 Transcription Factor Family AT5G47670 61.2 9.5e-49 190.7
Cla02g00899 CCT,ECH 74 185 CCAAT-HAP3 Transcription Factor Family AT5G47670 60.7 7.5e-38 154.5
Cla10g00422 . 37 199 CCAAT-HAP3 Transcription Factor Family AT1G21970 61.1 4.6e-51 198.4
Cla07g00885 . 10 138 CCAAT-HAP3 Transcription Factor Family AT1G21970 52.6 2.2e-37 152.9
Cla02g00899 CCT,ECH 69 196 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.0 1.4e-56 216.1
Cla10g00404 . 1 151 CCAAT-HAP3 Transcription Factor Family AT4G14540 67.1 4.5e-50 194.5
Cla07g00885 . 29 135 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.1 6.1e-47 184.1
Cla02g01361 . 860 965 CCAAT-HAP3 Transcription Factor Family AT4G14540 76.4 2.4e-43 172.2
Cla09g00572 . 175 270 CCAAT-HAP3 Transcription Factor Family AT4G14540 72.9 2.0e-37 152.5
Cla02g01361 . 847 966 CCAAT-HAP3 Transcription Factor Family AT2G38880 78.3 1.2e-49 193.0
Cla02g00899 CCT,ECH 69 181 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.8 1.5e-42 169.5
Cla10g00404 . 1 110 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.3 3.6e-41 164.9
Cla07g00885 . 16 122 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.0 3.6e-41 164.9
Cla09g00572 . 171 266 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.9 2.9e-38 155.2
Cla09g00572 . 173 270 CCAAT-HAP3 Transcription Factor Family AT2G47810 84.7 1.1e-43 173.3
Cla10g00404 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G47810 75.0 6.1e-39 157.5
Cla02g00899 CCT,ECH 86 185 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.0 6.1e-39 157.5
Cla07g00885 . 32 140 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.9 5.1e-38 154.5
Cla02g01361 . 853 994 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.9 4.5e-56 214.5
Cla10g01956 . 132 262 CCAAT-HAP3 Transcription Factor Family AT2G37060 74.6 1.2e-48 189.9
Cla02g00899 CCT,ECH 74 184 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.6 1.4e-44 176.4
Cla07g00885 . 31 136 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.6 4.1e-41 164.9
Cla10g00404 . 6 113 CCAAT-HAP3 Transcription Factor Family AT2G37060 71.6 2.7e-40 162.2
Cla09g00572 . 174 276 CCAAT-HAP3 Transcription Factor Family AT2G37060 68.9 8.0e-37 150.6
Cla07g00885 . 19 133 CCAAT-HAP3 Transcription Factor Family AT2G13570 75.0 2.2e-44 176.0
Cla02g00899 CCT,ECH 90 191 CCAAT-HAP3 Transcription Factor Family AT2G13570 81.4 3.8e-44 175.3
Cla10g00404 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G13570 79.2 8.7e-41 164.1
Cla02g01361 . 873 973 CCAAT-HAP3 Transcription Factor Family AT2G13570 72.3 1.3e-39 160.2
Cla09g00572 . 175 275 CCAAT-HAP3 Transcription Factor Family AT2G13570 73.3 4.8e-39 158.3
Cla02g00899 CCT,ECH 69 200 CCAAT-HAP3 Transcription Factor Family AT5G47640 71.5 4.4e-52 201.4
Cla10g00404 . 1 117 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.6 2.0e-49 192.6
Cla07g00885 . 27 132 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.2 8.8e-45 177.2
Cla02g01361 . 873 985 CCAAT-HAP3 Transcription Factor Family AT5G47640 74.4 2.2e-43 172.6
Cla09g00572 . 175 271 CCAAT-HAP3 Transcription Factor Family AT5G47640 76.3 1.2e-38 156.8
Cla02g01361 . 858 994 CCAAT-HAP3 Transcription Factor Family AT3G53340 79.6 4.6e-56 214.5
Cla10g01956 . 132 261 CCAAT-HAP3 Transcription Factor Family AT3G53340 70.7 1.9e-46 182.6
Cla02g00899 CCT,ECH 74 193 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.7 2.8e-45 178.7
Cla10g00404 . 6 113 CCAAT-HAP3 Transcription Factor Family AT3G53340 72.5 5.5e-41 164.5
Cla07g00885 . 20 124 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.3 7.1e-41 164.1
Cla09g00572 . 174 276 CCAAT-HAP3 Transcription Factor Family AT3G53340 69.9 1.6e-37 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010325 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 0 1 0 1 1 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61423 PF00808 CBFD_NFYB_HMF 6.70E-27 CL0012 Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla07g00885 Cla_Chr07 FPKM 4.113825 4.865009 9.316457 10.87735 52.605381 47.542416 49.842258 8.721036 7.792414 7.987594