Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00886 ATGAAGAAACGGCTAAATGGGGGTTTGGTCTTGCTCTGGTTCATCTTTATGGGGCAATTCTATACCAATGCGTCGGCAACTGTAGAAGCTACTGCTCTGCACATATTTCGATTGAATTTGGAAGATCCAAACAATGTTCTGCAGAGTTGGGATCCCACCCTTGTTAATCCCTGCACTTGGTTTCATGTCACTTGCAACAATGAAAATAACATTATAAGAGTCGACCTTGGAAATGCTGGATTGTCTGGTAAATTAGTACCACAGCTTGGTCAACTTAAAAGTCTTCAATACTTGGAGCTCTATGGCAACGACATAAGTGGAGAGATTCCAGATGAGCTCGGGAATCTGGAAAATTTGGTTAGCCTAGACCTTTACTTGAACGGTTTAACTGGCCCGATTCCAGACACATTTGGCAAGCTCACACAATTGCGTTTCCTTCGGCTAAATGACAACAAACTATCTGGCTTGATTCCGATTTCCTTGACTAATATTTCCACCCTGCAAGTCTTGGATCTATCAAACAACCTTTTATCTGGAAAGGTTCCAAATAATGGCTCATTTTCACTATTTACTCCCATCAGTTTTGCAAATAACTTGGATCTATGTGGTCTGGTGACTGGGAAACCTTGCCCTGGGGATCCTCCCTTTTCTCCACCACCGCCATTTGTTCCACAGTCAACATTTTCTTCCCATGAAGTAAACAATCCCAATGGAGCAATTGTTGGAGGAGTTGCTGCAGGTGCTGCTTTACTCTTTGCCACTCCGGCTATCATATTCGTCTATTGGCATTGGAGGAGATCACGAGAAATATTCTTCGATGTCCCAGCAGAAGAAGATTCAGAGATCAACTTGGGGCAGCTGAAACGGTTTTCTCTGAGAGACTTACAAGTTGCAACAGATAACTTCTGCAACAAAAATATTCTCGGTCGAGGTGGATTTGGTAAAGTCTATAGGGGACGTCTAGCTGATGGCTCATTAGTAGCAGTAAAAAGGCTCAAAGAAGAGCGTACGCCAGGTGGAGAGTTGCAGTTCCAAACAGAAGTAGAGATGATTAGCATGGCAGTGCACCGGAATCTTTTGCGACTACATGGATTTTGTACAACATCAAGTGAACGCCTCCTTGTTTATCCTTATATGGCCAATGGAAGTGTTGCATCATGTTTAAGAGCTGGTATATTTTTCATAGAACGTCCACAATCTGAAGCTCCTCTGGACTGGCCAACTCGAAAGAAAGTTGCATTAGGTTCTGCAAGGGGCCTTTCTTATTTACATGATGGATGTGATCCGAAAATCATCCATCGTGATGTGAAGGCTGCAAATATTTTACTGGATGAGGAATTTGAGGCTGTCGTCGGCGACTTTGGTCTCGCAAAGTTAATGGACTACAAGGATACTCATGTTACAACCGCAGTAAGAGGTACTATTGGGCATATAGCTCCAGAGTATCTCTCAACTGGGAAATCATCTGAGAAGACCGATGTTTTTGGTTATGGCATTATGCTCTTGGAGCTAATAACTGGACAGAGGGCTTTCGATCTTGCTCGACTGGCAAACGATGAAGATGTTATGCTGCTTGATTGGGTCAAAGGCCTTCTGAAAGAGAAAAAGTTGGAGATGTTGGTTGACCCTGATCTGAAGGACAACTATGATGAAATTGAAGTTGAGCAAATAATCCAAGTAGCACTTCTCTGCACACAGAGCTCCCCTATGGAACGACCGAAAATGTCTGATGTGGTCAGAATGCTCGAAGGAGACGGCTTGACTGAGCGATGGGAGGAATGGCAGAGAGTCGAGGTAGTCTATCATGAAACCGAATTAGCATCTTCTCAAACTTCTGAATGGATGGTCGATTCGACTGAAAACGTTCGTGCTTTTGAATTATCTGGTCCTAGATAA 1896 43.41 MKKRLNGGLVLLWFIFMGQFYTNASATVEATALHIFRLNLEDPNNVLQSWDPTLVNPCTWFHVTCNNENNIIRVDLGNAGLSGKLVPQLGQLKSLQYLELYGNDISGEIPDELGNLENLVSLDLYLNGLTGPIPDTFGKLTQLRFLRLNDNKLSGLIPISLTNISTLQVLDLSNNLLSGKVPNNGSFSLFTPISFANNLDLCGLVTGKPCPGDPPFSPPPPFVPQSTFSSHEVNNPNGAIVGGVAAGAALLFATPAIIFVYWHWRRSREIFFDVPAEEDSEINLGQLKRFSLRDLQVATDNFCNKNILGRGGFGKVYRGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLHGFCTTSSERLLVYPYMANGSVASCLRAGIFFIERPQSEAPLDWPTRKKVALGSARGLSYLHDGCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDEDVMLLDWVKGLLKEKKLEMLVDPDLKDNYDEIEVEQIIQVALLCTQSSPMERPKMSDVVRMLEGDGLTERWEEWQRVEVVYHETELASSQTSEWMVDSTENVRAFELSGPR 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24514741 24519255 + ClCG07G009300.2 Cla07g00886 276874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00886 631 Gene3D Ribonuclease Inhibitor 26 212 IPR032675 -
Cla07g00886 631 Gene3D Transferase(Phosphotransferase) domain 1 379 602 - -
Cla07g00886 631 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 11 631 - -
Cla07g00886 631 SUPERFAMILY Protein kinase-like (PK-like) 282 583 IPR011009 -
Cla07g00886 631 ProSitePatterns Serine/Threonine protein kinases active-site signature. 431 443 IPR008271 GO:0004672|GO:0006468
Cla07g00886 631 ProSiteProfiles Protein kinase domain profile. 302 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla07g00886 631 SUPERFAMILY L domain-like 29 194 - -
Cla07g00886 631 Pfam Leucine rich repeat N-terminal domain 29 66 IPR013210 -
Cla07g00886 631 PANTHER - 11 631 - -
Cla07g00886 631 Pfam Protein kinase domain 305 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla07g00886 631 SMART serkin_6 302 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla07g00886 631 Gene3D Phosphorylase Kinase; domain 1 271 378 - -
Cla07g00886 631 ProSitePatterns Protein kinases ATP-binding region signature. 308 330 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00011 Cla-Chr2:154226 Cla07g00886 Cla-Chr7:24514741 0 dispersed
Cla07g00886 Cla-Chr7:24514741 Cla08g00308 Cla-Chr8:7302249 0 dispersed
Cla07g00886 Cla-Chr7:24514741 Cla05g02357 Cla-Chr5:35159817 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80687 PF00069 Pkinase 7.20E-43 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00886 K13418 - csv:101208905 1103.58