Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00897 ATGATGGGGAGAGTTAAGTTGCAAATCAAGAGAATTGAAAATACTACGAATCGACAGGTCACTTTTTCCAAACGCAGAAATGGACTCATCAAAAAGGCTTATGAACTCTCTGTTCTTTGCGATATTGATATTGCTCTTATTATGTTCTCTCCTTCCGGCCGCCTCAGCCAGTTCTCCGGCCGCCGCAGAATTGAGGATGTGCTTGCTCGTTACATAAATTTGCCCGATCATGATAGAGGAAGCGTTGTTCATAATAAAGAGTTTTTACTTGGGACACTAAATAATTTGAAGACAGAGAACGAGATCGCACTCCAACTTGTCAATCCTACATCAAGCAACTCCAATGTTGAGGAGCTTCAACAAGAGGTCGGTACATTGAGACATGAGCTGCAACTTGCGGAGCAGCAGCTAAGGTTATTTGAACCGGATCCTCTTTCATTCACATCGAATGGTGAAATAGATTCTTGTGAGAAGAATCTTTTAGACACTTTGGCGCGGATCACCCAAAGAAAGAAAGATTTATTAAGTACTCACTTATCTCCTTATGATCGTCCAAATGGGATTCAGCTATATTTGGATTCAAAAGACGGAATACCAACATCTTTTGAAACCGATGTTGCAAATTGGTTGCCCGAAAATGGCCAGAACTCGTCCCAGATTTGTGTTGCATCTGAGTCATCTTCGATTCCTCAAAGTGGTCAATATCCAACCACAGTTTATGATCAAGTATCACAAGCAACAAACATTAATGTTGGGTCATGTAACATTGGTGGGTGCGACATTGGAATCCCCAACGATGATGGTTACTCTCCTTGGCATCACAACTACACCACAACTCAGCTCCTCTCTTCCTTCATCCCACAAACTTCCTTTGATACTTTGAAGCATGACATTGGAGAACCTTGTATGAATACAATGATGTCGCAACAACAAGTTGATAGCATTTCAAATGGGAATCAAATGCCTCTAAGTGATGGAAGTGCCAATTACGATAATGGCAAGTTGCCTCAACTCAACGTGGACTAA 1026 41.52 MMGRVKLQIKRIENTTNRQVTFSKRRNGLIKKAYELSVLCDIDIALIMFSPSGRLSQFSGRRRIEDVLARYINLPDHDRGSVVHNKEFLLGTLNNLKTENEIALQLVNPTSSNSNVEELQQEVGTLRHELQLAEQQLRLFEPDPLSFTSNGEIDSCEKNLLDTLARITQRKKDLLSTHLSPYDRPNGIQLYLDSKDGIPTSFETDVANWLPENGQNSSQICVASESSSIPQSGQYPTTVYDQVSQATNINVGSCNIGGCDIGIPNDDGYSPWHHNYTTTQLLSSFIPQTSFDTLKHDIGEPCMNTMMSQQQVDSISNGNQMPLSDGSANYDNGKLPQLNVD 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24703483 24712217 + ClCG07G009420.2 Cla07g00897 276885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00897 341 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 2 307 - -
Cla07g00897 341 ProSitePatterns MADS-box domain signature. 4 58 IPR002100 GO:0003677|GO:0046983
Cla07g00897 341 Gene3D - 14 90 IPR036879 GO:0003677|GO:0046983
Cla07g00897 341 PANTHER SERUM RESPONSE FACTOR HOMOLOG 2 307 - -
Cla07g00897 341 ProSiteProfiles MADS-box domain profile. 2 62 IPR002100 GO:0003677|GO:0046983
Cla07g00897 341 Coils Coil 116 136 - -
Cla07g00897 341 SMART madsneu2 2 61 IPR002100 GO:0003677|GO:0046983
Cla07g00897 341 PRINTS MADS domain signature 4 24 IPR002100 GO:0003677|GO:0046983
Cla07g00897 341 PRINTS MADS domain signature 24 39 IPR002100 GO:0003677|GO:0046983
Cla07g00897 341 PRINTS MADS domain signature 39 60 IPR002100 GO:0003677|GO:0046983
Cla07g00897 341 CDD MADS_MEF2_like 3 76 IPR033896 GO:0000977|GO:0045944
Cla07g00897 341 MobiDBLite consensus disorder prediction 310 341 - -
Cla07g00897 341 SUPERFAMILY SRF-like 3 86 IPR036879 GO:0003677|GO:0046983
Cla07g00897 341 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 58 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01191 Cla-Chr4:27065147 Cla07g00897 Cla-Chr7:24703483 1.34E-24 dispersed
Cla07g00897 Cla-Chr7:24703483 Cla01g02351 Cla-Chr1:37256979 5.39E-26 dispersed
Cla07g00897 Cla-Chr7:24703483 Cla05g02432 Cla-Chr5:35817899 6.48E-27 transposed
Cla07g00897 Cla-Chr7:24703483 Cla03g00363 Cla-Chr3:4173515 3.52E-28 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61427 PF00319 SRF-TF 9.70E-26 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00897 - - csv:101222576 582.408