Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00897 ATGATGGGGAGAGTTAAGTTGCAAATCAAGAGAATTGAAAATACTACGAATCGACAGGTCACTTTTTCCAAACGCAGAAATGGACTCATCAAAAAGGCTTATGAACTCTCTGTTCTTTGCGATATTGATATTGCTCTTATTATGTTCTCTCCTTCCGGCCGCCTCAGCCAGTTCTCCGGCCGCCGCAGAATTGAGGATGTGCTTGCTCGTTACATAAATTTGCCCGATCATGATAGAGGAAGCGTTGTTCATAATAAAGAGTTTTTACTTGGGACACTAAATAATTTGAAGACAGAGAACGAGATCGCACTCCAACTTGTCAATCCTACATCAAGCAACTCCAATGTTGAGGAGCTTCAACAAGAGGTCGGTACATTGAGACATGAGCTGCAACTTGCGGAGCAGCAGCTAAGGTTATTTGAACCGGATCCTCTTTCATTCACATCGAATGGTGAAATAGATTCTTGTGAGAAGAATCTTTTAGACACTTTGGCGCGGATCACCCAAAGAAAGAAAGATTTATTAAGTACTCACTTATCTCCTTATGATCGTCCAAATGGGATTCAGCTATATTTGGATTCAAAAGACGGAATACCAACATCTTTTGAAACCGATGTTGCAAATTGGTTGCCCGAAAATGGCCAGAACTCGTCCCAGATTTGTGTTGCATCTGAGTCATCTTCGATTCCTCAAAGTGGTCAATATCCAACCACAGTTTATGATCAAGTATCACAAGCAACAAACATTAATGTTGGGTCATGTAACATTGGTGGGTGCGACATTGGAATCCCCAACGATGATGGTTACTCTCCTTGGCATCACAACTACACCACAACTCAGCTCCTCTCTTCCTTCATCCCACAAACTTCCTTTGATACTTTGAAGCATGACATTGGAGAACCTTGTATGAATACAATGATGTCGCAACAACAAGTTGATAGCATTTCAAATGGGAATCAAATGCCTCTAAGTGATGGAAGTGCCAATTACGATAATGGCAAGTTGCCTCAACTCAACGTGGACTAA 1026 41.52 MMGRVKLQIKRIENTTNRQVTFSKRRNGLIKKAYELSVLCDIDIALIMFSPSGRLSQFSGRRRIEDVLARYINLPDHDRGSVVHNKEFLLGTLNNLKTENEIALQLVNPTSSNSNVEELQQEVGTLRHELQLAEQQLRLFEPDPLSFTSNGEIDSCEKNLLDTLARITQRKKDLLSTHLSPYDRPNGIQLYLDSKDGIPTSFETDVANWLPENGQNSSQICVASESSSIPQSGQYPTTVYDQVSQATNINVGSCNIGGCDIGIPNDDGYSPWHHNYTTTQLLSSFIPQTSFDTLKHDIGEPCMNTMMSQQQVDSISNGNQMPLSDGSANYDNGKLPQLNVD 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24703483 24712217 + ClCG07G009420.2 Cla07g00897 276885

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00897 341 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 2 307 - -
Cla07g00897 341 ProSitePatterns MADS-box domain signature. 4 58 IPR002100 GO:0003677|GO:0046983
Cla07g00897 341 Gene3D - 14 90 IPR036879 GO:0003677|GO:0046983
Cla07g00897 341 PANTHER SERUM RESPONSE FACTOR HOMOLOG 2 307 - -
Cla07g00897 341 ProSiteProfiles MADS-box domain profile. 2 62 IPR002100 GO:0003677|GO:0046983
Cla07g00897 341 Coils Coil 116 136 - -
Cla07g00897 341 SMART madsneu2 2 61 IPR002100 GO:0003677|GO:0046983
Cla07g00897 341 PRINTS MADS domain signature 4 24 IPR002100 GO:0003677|GO:0046983
Cla07g00897 341 PRINTS MADS domain signature 24 39 IPR002100 GO:0003677|GO:0046983
Cla07g00897 341 PRINTS MADS domain signature 39 60 IPR002100 GO:0003677|GO:0046983
Cla07g00897 341 CDD MADS_MEF2_like 3 76 IPR033896 GO:0000977|GO:0045944
Cla07g00897 341 MobiDBLite consensus disorder prediction 310 341 - -
Cla07g00897 341 SUPERFAMILY SRF-like 3 86 IPR036879 GO:0003677|GO:0046983
Cla07g00897 341 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 58 IPR002100 GO:0003677|GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00897 - - - csv:101222576 582.408
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01191 Cla-Chr4:27065147 Cla07g00897 Cla-Chr7:24703483 1.34E-24 dispersed
Cla07g00897 Cla-Chr7:24703483 Cla01g02351 Cla-Chr1:37256979 5.39E-26 dispersed
Cla07g00897 Cla-Chr7:24703483 Cla05g02432 Cla-Chr5:35817899 6.48E-27 transposed
Cla07g00897 Cla-Chr7:24703483 Cla03g00363 Cla-Chr3:4173515 3.52E-28 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla10g00956 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 1.7e-50 196.8
Cla07g00897 . 2 175 Type I MADS-box Gene Family AT1G77950 59.4 1.5e-52 203.4
Cla03g01710 . 1 163 Type I MADS-box Gene Family AT5G48670 64.4 7.1e-55 211.5
Cla01g01019 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 1.2e-46 184.1
Cla10g00956 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 1.7e-50 196.8
Cla07g00897 . 2 175 Type I MADS-box Gene Family AT1G77950 59.4 1.5e-52 203.4
Cla03g01710 . 1 163 Type I MADS-box Gene Family AT5G48670 64.4 7.1e-55 211.5
Cla01g01019 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 1.2e-46 184.1
Cla10g00956 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 1.7e-50 196.8
Cla03g01710 . 1 163 Type I MADS-box Gene Family AT5G48670 64.4 7.1e-55 211.5
Cla01g01019 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 1.2e-46 184.1
Cla07g00897 . 2 175 Type I MADS-box Gene Family AT1G77950 59.4 1.5e-52 203.4
Cla10g00956 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 1.7e-50 196.8
Cla03g01710 . 1 163 Type I MADS-box Gene Family AT5G48670 64.4 7.1e-55 211.5
Cla01g01019 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 1.2e-46 184.1
Cla07g00897 . 2 175 Type I MADS-box Gene Family AT1G77950 59.4 1.5e-52 203.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008266 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 3 1 1 1 1 1 1 1 0 1 1 1 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61427 PF00319 SRF-TF 9.70E-26 No_clan Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla07g00897 Cla_Chr07 FPKM 4.899071 4.943317 8.468286 8.378554 11.212231 10.920907 10.190861 26.859444 29.577433 30.857151