Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla07g00897 | ATGATGGGGAGAGTTAAGTTGCAAATCAAGAGAATTGAAAATACTACGAATCGACAGGTCACTTTTTCCAAACGCAGAAATGGACTCATCAAAAAGGCTTATGAACTCTCTGTTCTTTGCGATATTGATATTGCTCTTATTATGTTCTCTCCTTCCGGCCGCCTCAGCCAGTTCTCCGGCCGCCGCAGAATTGAGGATGTGCTTGCTCGTTACATAAATTTGCCCGATCATGATAGAGGAAGCGTTGTTCATAATAAAGAGTTTTTACTTGGGACACTAAATAATTTGAAGACAGAGAACGAGATCGCACTCCAACTTGTCAATCCTACATCAAGCAACTCCAATGTTGAGGAGCTTCAACAAGAGGTCGGTACATTGAGACATGAGCTGCAACTTGCGGAGCAGCAGCTAAGGTTATTTGAACCGGATCCTCTTTCATTCACATCGAATGGTGAAATAGATTCTTGTGAGAAGAATCTTTTAGACACTTTGGCGCGGATCACCCAAAGAAAGAAAGATTTATTAAGTACTCACTTATCTCCTTATGATCGTCCAAATGGGATTCAGCTATATTTGGATTCAAAAGACGGAATACCAACATCTTTTGAAACCGATGTTGCAAATTGGTTGCCCGAAAATGGCCAGAACTCGTCCCAGATTTGTGTTGCATCTGAGTCATCTTCGATTCCTCAAAGTGGTCAATATCCAACCACAGTTTATGATCAAGTATCACAAGCAACAAACATTAATGTTGGGTCATGTAACATTGGTGGGTGCGACATTGGAATCCCCAACGATGATGGTTACTCTCCTTGGCATCACAACTACACCACAACTCAGCTCCTCTCTTCCTTCATCCCACAAACTTCCTTTGATACTTTGAAGCATGACATTGGAGAACCTTGTATGAATACAATGATGTCGCAACAACAAGTTGATAGCATTTCAAATGGGAATCAAATGCCTCTAAGTGATGGAAGTGCCAATTACGATAATGGCAAGTTGCCTCAACTCAACGTGGACTAA | 1026 | 41.52 | MMGRVKLQIKRIENTTNRQVTFSKRRNGLIKKAYELSVLCDIDIALIMFSPSGRLSQFSGRRRIEDVLARYINLPDHDRGSVVHNKEFLLGTLNNLKTENEIALQLVNPTSSNSNVEELQQEVGTLRHELQLAEQQLRLFEPDPLSFTSNGEIDSCEKNLLDTLARITQRKKDLLSTHLSPYDRPNGIQLYLDSKDGIPTSFETDVANWLPENGQNSSQICVASESSSIPQSGQYPTTVYDQVSQATNINVGSCNIGGCDIGIPNDDGYSPWHHNYTTTQLLSSFIPQTSFDTLKHDIGEPCMNTMMSQQQVDSISNGNQMPLSDGSANYDNGKLPQLNVD | 341 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 24703483 | 24712217 | + | ClCG07G009420.2 | Cla07g00897 | 276885 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla07g00897 | 341 | PANTHER | AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 | 2 | 307 | - | - | |
Cla07g00897 | 341 | ProSitePatterns | MADS-box domain signature. | 4 | 58 | IPR002100 | GO:0003677|GO:0046983 | |
Cla07g00897 | 341 | Gene3D | - | 14 | 90 | IPR036879 | GO:0003677|GO:0046983 | |
Cla07g00897 | 341 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 2 | 307 | - | - | |
Cla07g00897 | 341 | ProSiteProfiles | MADS-box domain profile. | 2 | 62 | IPR002100 | GO:0003677|GO:0046983 | |
Cla07g00897 | 341 | Coils | Coil | 116 | 136 | - | - | |
Cla07g00897 | 341 | SMART | madsneu2 | 2 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Cla07g00897 | 341 | PRINTS | MADS domain signature | 4 | 24 | IPR002100 | GO:0003677|GO:0046983 | |
Cla07g00897 | 341 | PRINTS | MADS domain signature | 24 | 39 | IPR002100 | GO:0003677|GO:0046983 | |
Cla07g00897 | 341 | PRINTS | MADS domain signature | 39 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Cla07g00897 | 341 | CDD | MADS_MEF2_like | 3 | 76 | IPR033896 | GO:0000977|GO:0045944 | |
Cla07g00897 | 341 | MobiDBLite | consensus disorder prediction | 310 | 341 | - | - | |
Cla07g00897 | 341 | SUPERFAMILY | SRF-like | 3 | 86 | IPR036879 | GO:0003677|GO:0046983 | |
Cla07g00897 | 341 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 11 | 58 | IPR002100 | GO:0003677|GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla04g01191 | Cla-Chr4:27065147 | Cla07g00897 | Cla-Chr7:24703483 | 1.34E-24 | dispersed | |
Cla07g00897 | Cla-Chr7:24703483 | Cla01g02351 | Cla-Chr1:37256979 | 5.39E-26 | dispersed | |
Cla07g00897 | Cla-Chr7:24703483 | Cla05g02432 | Cla-Chr5:35817899 | 6.48E-27 | transposed | |
Cla07g00897 | Cla-Chr7:24703483 | Cla03g00363 | Cla-Chr3:4173515 | 3.52E-28 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61427 | PF00319 | SRF-TF | 9.70E-26 | No_clan | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla07g00897 | - | - | csv:101222576 | 582.408 |