Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00914 ATGATGGTGGAGTTCCATGGAGAAATCCGAGACCCCAACGATGGTGAAGACCAAGAACATGAAGAAGAAGAAGAGGAAATTAGCTACGATGATCTCAAGAAACGAATGTGGAAAGATCGACAAAGGTTGAAGAAGATGAAGGAGAAGCGTGATGATGAAGAGCCTGAATCCGCCGCTAGAGAAGAAGCCTCTCGCCGTAAGAAAATGGCTAGAGCTCAAGATTCAATCCTCAAGTATATGGATAAGATCATGGAAGCTTGTAAGGCACAAGGGTTTGTTTATGGCATCGTCCCCGAAAAGGGTAAGCCCGTCACCGGCTCCTCCGAGAGCCTCCGTGAGTGGTGGCGGAATGACGTCCGATTCGAACAAGATGCTCCCATGGCCATAGCAAAATTCCTCCCCAAAGTAATCGAAGAATCAGGGCTCGATCCCAATTCGTTTTTGCACCTACTCACCGATTTACAGGACACAACATTAGGCTCCATTCTCTCTGCTCTGATGCAGCACTGTATTCCCCCGCAGAGGAAATTCCCACTGGAGAAGGGTTTAGCGCCGCCGTGGTGGCCGACGGGTAACGAGCTTTGGTGGGGAGAACAGGGTCCCGCCGGCGGGCATGGTGTTCCGCCGTACAAAAAGCCCCACGACCTCAAAAAGGCTTGGAAAATCAGTGTCCTGGCGGCGGTGATCAAACACATGTCCCCTGATATGGACAACATGAGGAAATTAGTTCGGCAATCGAAGAATTTACAAGCAAAAATGACGGCAAAAGAGACGCTTACTTGGGCTAAGGTAGTGAATCAAGAAGAAGCCCTGTCACAACTAACCAGAAAAAAACTCAAAATCACACCCGACGTAGAAGAAGAAGAAGAAGAAAAAGAACACGAGAAAAACAGAGGCGAACAGGGCACGGATGGAATTATGGAGAAACGAAAGTGCATATTCGAAGAAGAAGCTGTAGCCGATTCGATACTGTACCCATGCCAGAATCAATGGTGTCCACAGAGCGAGGTGCTGATGGGATTCATGGACAAGAACGCAAGAACAGAGCATGAGACGCAGTGCATTTACAGAGGCGGGCAGACGGCGGAACAAGAACAATTCTCAGAGGAGCAGTCGATCGACACGCATTTGAAGAGCGTGGTGGATTGGATGAACTGGGAGTTATCAAGAGCAGAGCCGGGCAGCGACGAGGCAAGGATCGAAGATGCCGGAGACGGGTCGGGCAGCAGCACGGTGGAGGATTACTGGAATGGCGGCGCGGTGGAGGAGGCGTTTGAGATGCAGAGAAGGAGTATGGATTTGAATGCGAGTCCGGCGGAGGATTTGGGTGCCCAACAAGATGCCACTTCCATTTGGGATTTGAGATACGAATGGGCTGAGGAATGA 1386 50.29 MMVEFHGEIRDPNDGEDQEHEEEEEEISYDDLKKRMWKDRQRLKKMKEKRDDEEPESAAREEASRRKKMARAQDSILKYMDKIMEACKAQGFVYGIVPEKGKPVTGSSESLREWWRNDVRFEQDAPMAIAKFLPKVIEESGLDPNSFLHLLTDLQDTTLGSILSALMQHCIPPQRKFPLEKGLAPPWWPTGNELWWGEQGPAGGHGVPPYKKPHDLKKAWKISVLAAVIKHMSPDMDNMRKLVRQSKNLQAKMTAKETLTWAKVVNQEEALSQLTRKKLKITPDVEEEEEEKEHEKNRGEQGTDGIMEKRKCIFEEEAVADSILYPCQNQWCPQSEVLMGFMDKNARTEHETQCIYRGGQTAEQEQFSEEQSIDTHLKSVVDWMNWELSRAEPGSDEARIEDAGDGSGSSTVEDYWNGGAVEEAFEMQRRSMDLNASPAEDLGAQQDATSIWDLRYEWAEE 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 25194193 25195578 + ClCG07G009610.1 Cla07g00914 276902

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00914 461 MobiDBLite consensus disorder prediction 1 67 - -
Cla07g00914 461 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 16 457 IPR006957 GO:0005634
Cla07g00914 461 Coils Coil 29 49 - -
Cla07g00914 461 SUPERFAMILY DNA-binding domain of EIN3-like 148 271 IPR023278 GO:0003700|GO:0005634
Cla07g00914 461 Pfam Ethylene insensitive 3 30 269 IPR006957 GO:0005634
Cla07g00914 461 PANTHER ETHYLENE INSENSITIVE 3-LIKE 5 PROTEIN 16 457 - -
Cla07g00914 461 MobiDBLite consensus disorder prediction 44 67 - -
Cla07g00914 461 MobiDBLite consensus disorder prediction 391 412 - -
Cla07g00914 461 Gene3D - 142 278 IPR023278 GO:0003700|GO:0005634
Cla07g00914 461 Gene3D - 58 141 IPR023278 GO:0003700|GO:0005634
Cla07g00914 461 MobiDBLite consensus disorder prediction 282 303 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00914 K14514 EIN3; ethylene-insensitive protein 3 - csv:101210698 717.227
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00914 Cla-Chr7:25194193 Cla08g00868 Cla-Chr8:21125416 1.06E-110 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla03g01353 . 2 626 EIL Transcription Factor Family AT2G27050 58.2 1.2e-190 663.3
Cla08g00868 . 71 556 EIL Transcription Factor Family AT2G27050 62.8 5.6e-167 584.7
Cla03g01291 . 44 326 EIL Transcription Factor Family AT2G27050 62.5 5.2e-96 349.0
Cla03g01291 . 44 578 EIL Transcription Factor Family AT1G73730 55.4 2.3e-146 516.2
Cla03g01353 . 36 334 EIL Transcription Factor Family AT1G73730 62.5 7.6e-105 378.3
Cla08g00868 . 101 396 EIL Transcription Factor Family AT1G73730 61.3 2.4e-103 373.2
Cla07g00914 . 27 273 EIL Transcription Factor Family AT1G73730 54.3 9.3e-71 265.0
Cla03g01353 . 3 626 EIL Transcription Factor Family AT3G20770 62.5 1.4e-211 733.0
Cla08g00868 . 71 554 EIL Transcription Factor Family AT3G20770 63.9 1.5e-170 596.7
Cla03g01291 . 44 292 EIL Transcription Factor Family AT3G20770 69.7 1.6e-98 357.5
Cla07g00914 . 27 364 EIL Transcription Factor Family AT5G65100 50.6 3.5e-94 342.8
Cla03g01291 . 83 288 EIL Transcription Factor Family AT5G65100 59.3 4.6e-70 262.7
Cla07g00914 . 27 364 EIL Transcription Factor Family AT5G10120 54.2 5.4e-96 348.6
Cla03g01291 . 44 290 EIL Transcription Factor Family AT5G10120 55.2 6.5e-73 271.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012054 0 1 0 0 0 1 2 2 1 1 1 1 2 1 1 2 1 0 2 1 1 2 0 0 1 1 1 2 1 0 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61428 PF04873 EIN3 3.00E-110 No_clan Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla07g00914 Cla_Chr07 FPKM 5.912192 7.139144 2.700751 2.699275 0.746725 0.926352 0.679305 1.141382 1.158905 0.807706