Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla07g00932 | ATGTCGAAAGAAGTGACGGAAGAGGGACAGTCCGGTCTGAGAAAGGACTACGTCGACCCCCCGCCGGCGCCGCTCATCGACGCCGCCGAACTCACTCTCTGGTCCTTCTACAGAGCCCTAATCGCTGAGTTCATCGCCACTCTCCTCTTCCTCTACGTCACAATCGCCACCGTCATCGGCAACAACAAACAAACCAAAATGTGCGACGGCGTCGGAATCCTCGGAATCGCCTGGGCCTTCGGCGGCATGATTTTCGTCCTCGTCTACTGCACCGCTGGAATCTCCGGTGGTCATATTAATCCGGCGGTGACATTCGGGCTGTTTCTCGCGAGGAAAGTGTCACTGATTAGAGCGGTGGGGTACATGGTGGCGCAGTGCGCCGGAGCCGTCGTCGGCGTTGGGTTGGTTAAGGCTTTTATGAAGCATGATTATAACAACAACGGCGGCGGAGCCAACGCCGTTAATTCTGGTTACAGTAGGGGAACAGCTCTTGGTGNTTTTTTTTTTTTTTTTTTCTCTTTT | 522 | 54.02 | MSKEVTEEGQSGLRKDYVDPPPAPLIDAAELTLWSFYRALIAEFIATLLFLYVTIATVIGNNKQTKMCDGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVGYMVAQCAGAVVGVGLVKAFMKHDYNNNGGGANAVNSGYSRGTALGXFFFFFFSF | 174 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 25408662 | 25409269 | + | ClCG07G009790.1 | Cla07g00932 | 276920 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla07g00932 | 174 | Pfam | Major intrinsic protein | 31 | 169 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla07g00932 | 174 | Gene3D | Glycerol uptake facilitator protein. | 23 | 174 | IPR023271 | - | |
Cla07g00932 | 174 | PANTHER | AQUAPORIN PIP-TYPE-RELATED | 1 | 166 | - | - | |
Cla07g00932 | 174 | ProSitePatterns | MIP family signature. | 98 | 106 | IPR022357 | - | |
Cla07g00932 | 174 | SUPERFAMILY | Aquaporin-like | 30 | 164 | IPR023271 | - | |
Cla07g00932 | 174 | PANTHER | AQUAPORIN OR AQUAGLYCEROPORIN RELATED | 1 | 166 | IPR034294 | - | |
Cla07g00932 | 174 | PRINTS | Major intrinsic protein family signature | 80 | 104 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla07g00932 | 174 | PRINTS | Major intrinsic protein family signature | 117 | 136 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla07g00932 | 174 | PRINTS | Major intrinsic protein family signature | 38 | 57 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla07g00932 | Cla-Chr7:25408662 | Cla05g02143 | Cla-Chr5:33021643 | 1.14E-80 | dispersed | |
Cla07g00932 | Cla-Chr7:25408662 | Cla02g00420 | Cla-Chr2:4119110 | 1.91E-118 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla07g00932 | K09872 | - | csv:101209627 | 309.301 |