Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00942 ATGGCTGCTCAATCGGTCGGCGAAACGGACGGCAAAGATTTTCCTTCCGACCTCCCTTATCTGTCCGGCTTCAACAACCATTTCTCATCGGAGGCGATTCCCGGCGCTCTTCCTCAATCCCAAAACAGTCCTCTCATATGCCCCTTCGGCCTCTATGCCGAGCAGATCTCCGGCACTTCCTTCACATCGCCTCGGAAAGCTAACTTGTGCAGTTGGCTGTATCGGATTAAGCCGTCGGTCACGCATGAACCGTTTAGGCAACGTTTGCCTAAAAACGAGAAGTTGATCAGTGAATTTAATGCATCAAATTGTTCATCGACTCCGACTCAGCTAAGGTGGAGACCGGCGGATGTTCCTGATTCACCGGTGGATTTCGTTGATGGCCTGTACACTGTCTGCGGAGCCGGCAGTTCGTTTCTCCGCCATGGGTTTGCTATTCACATGTACACAGCCAATAAGTCGATGGAGAACTGTGCGTTCTGTAATGCCGATGGCGACTTCTTGATAGTTCCTCAGAGTGGAAGGCTGTGGATTATAACAGAGTGTGGTAGACTGGAAGTTTCTCCAGGTGAAATAGTGGTTTTACCTCAAGGTTTTCGCTTTGTTGTTGATCTGCCTGATGGTCCATCACGTGGCTATGTAGCTGAGATTTTTGGCAGTCATTTCCAGCTTCCTGACCTTGGACCGATAGGTGCTAATGGTCTTGCTGCACCAAGGGATTTCCTTGCGCCTGTAGCCTGGTTTGAAAAGAGTTCTCGTCCTGGTTACACAATTGTTCAAAAATTTGGTGGGGAATTGTTTACTGCGATACAAGACTTTTCTCCCTTTAATGTAGTTGCCTGGCATGGAAATTATGTTCCCTATAAGTACGATCTCAGTAAGTTCTGCCCTTACAATACTGTGTTGTTTGATCACAGTGATCCATCAATAAATACAGTATTAACGGCGCCAACTGATAAACCTGGAGTAGCATTACTCGACTTTGTCATTTTCCCTCCCAGATGGCTTGTTGCTGAACACACATTCCGTCCTCCATATTACCATCGTAACTGCATGAGTGAATTTATGGGTCTCATATATGGAGGCTACGAGGCAAAAGCTGATGGGTTCGTTCCCGGAGGTGCCAGCCTTCATAATTGCATGACTCCCCATGGTCCTGATACTAAAACATATGAGGCTACTATTGCTCGAGGGAACGACGTTGGACCACACAAAATCACTGGCACAATGGCGTTTATGTTTGAATCAAGTCTGATCCCTCGTGTATGTTCTTGGGCTCTCGAGTCCCCATTCATGGATCACGACTATTACCAATGCTGGATAGGATTGAAATCTCATTTCAAAAATGAAGGAAGAGGAGATACGGATCCACAGAAGGTAAGAACTGAGTCTGAAAATGGAAGACAAATTGGATAA 1416 46.54 MAAQSVGETDGKDFPSDLPYLSGFNNHFSSEAIPGALPQSQNSPLICPFGLYAEQISGTSFTSPRKANLCSWLYRIKPSVTHEPFRQRLPKNEKLISEFNASNCSSTPTQLRWRPADVPDSPVDFVDGLYTVCGAGSSFLRHGFAIHMYTANKSMENCAFCNADGDFLIVPQSGRLWIITECGRLEVSPGEIVVLPQGFRFVVDLPDGPSRGYVAEIFGSHFQLPDLGPIGANGLAAPRDFLAPVAWFEKSSRPGYTIVQKFGGELFTAIQDFSPFNVVAWHGNYVPYKYDLSKFCPYNTVLFDHSDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIYGGYEAKADGFVPGGASLHNCMTPHGPDTKTYEATIARGNDVGPHKITGTMAFMFESSLIPRVCSWALESPFMDHDYYQCWIGLKSHFKNEGRGDTDPQKVRTESENGRQIG 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 25616272 25620284 + ClCG07G009900.1 Cla07g00942 276930

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00942 471 MobiDBLite consensus disorder prediction 450 471 - -
Cla07g00942 471 Pfam Homogentisate 1,2-dioxygenase C-terminal 293 447 IPR046451 -
Cla07g00942 471 PANTHER HOMOGENTISATE 1,2-DIOXYGENASE 15 449 IPR005708 GO:0004411|GO:0006559|GO:0006570
Cla07g00942 471 CDD cupin_HGO_N 111 219 - -
Cla07g00942 471 TIGRFAM hmgA: homogentisate 1,2-dioxygenase 18 447 IPR005708 GO:0004411|GO:0006559|GO:0006570
Cla07g00942 471 Pfam Homogentisate 1,2-dioxygenase N-terminal 20 292 IPR046452 -
Cla07g00942 471 Gene3D Jelly Rolls 280 418 IPR014710 -
Cla07g00942 471 SUPERFAMILY RmlC-like cupins 17 451 IPR011051 -
Cla07g00942 471 PANTHER HOMOGENTISATE 1,2-DIOXYGENASE 15 449 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00942 K00451 HGD, hmgA; homogentisate 1,2-dioxygenase [EC:1.13.11.5] - csv:101206356 967.607
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g149 . . . . . . . . . Cmo04g00599 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1041 Cone15ag1030 . . . . . . . . . . . . . . . Cma04g00562 . Car04g00533 . . Cpe01g00507 . . . . . . . Cla07g00942 Cam07g1018 Cec07g1088 Cco07g1066 Clacu07g0987 Cmu07g0983 Cre07g1357 . . Chy07g00956 Cme07g01326
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009963 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla07g00942 Cla_Chr07 FPKM 0.404875 0.425305 1.887904 2.136595 22.774813 24.490704 25.203241 3.012318 2.464799 2.645813