Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00945 ATGGCGACCGGCTTTCTGCTATCACTCTTCTTCTTCACTCCGCCATTAGGAGAGGTGACCCTTCATCTTCCAGCGATGAAACAGCGGCTTCGTTTTGGTTGCGCTGTCAGTTCTGAAACAATGTTCATCGATGGATCTATGTTTCTCTCTATCCCTTTTCTTGCTTTCTACTTAACCTTCTATTTCTACTCCCTCTCACAATCCCATGCCGGACGCTATCTGCTGCTTCTCCTTTGCATTCTGGTGAAACATGTTACAAGCAATGGAGAACAGGTACACGTAAAGACAGGAAAATCCAATGGTTTCCCTAATGGGAAGAGTGAAGATCTAGCTGCAACTCGAATTCAAAATGCATTTCGCGCATTTACGGCCAGAAAGGATGTACATAATTCGAAAGTGCCAGAGAGATGCCAGGATCTAATTCAAGGTGGAATGGCTACAAAACAAGTGTTAAGCTTCATTCATTCATGGAGCAGAATGCAGCAAGAAATTAGAGCACGTAGACTCTGTATGGTCACGGAATATCGAGTCAAGCAAAAGAAACTGGAAAATCAGCTGAAGCTTGAGGCTAAAATTCATGAACTTGAGGCAGAATGGTGCGGTGGGTCCGAAACAAAGGAGGAAATACTTTTCAAGATTCAGCAACGAGAAGAAGCTGCTGTAAGACGGGAGCGGGCTATGGCTTATGCATTCTCTCATCAGTGGAGGGCCAATTCCATCTTAGATCTGAGCCCGGCTTCATACAGCCTTGATAAAGAAAACTGGGGATGGAGCTGGAAGGACAGATGGATTGCTGCTCGGCCATGGGAGATCCGAGCTAATACTCATCCCACCATTCCAAAGAAGCCAGATATTCTTCGTCGAACAGCAAGGGGAGTTCAAAGGCCAGAAATTCTGCTATACCCAACAGCTGAAACAAGCTACAAGAAGCTGAAGGTTTTAAGGAAGTTGGTGAGGCAAAACAAATTTCTCTTGGATTCACTAATGCAAACATCATAG 999 44.84 MATGFLLSLFFFTPPLGEVTLHLPAMKQRLRFGCAVSSETMFIDGSMFLSIPFLAFYLTFYFYSLSQSHAGRYLLLLLCILVKHVTSNGEQVHVKTGKSNGFPNGKSEDLAATRIQNAFRAFTARKDVHNSKVPERCQDLIQGGMATKQVLSFIHSWSRMQQEIRARRLCMVTEYRVKQKKLENQLKLEAKIHELEAEWCGGSETKEEILFKIQQREEAAVRRERAMAYAFSHQWRANSILDLSPASYSLDKENWGWSWKDRWIAARPWEIRANTHPTIPKKPDILRRTARGVQRPEILLYPTAETSYKKLKVLRKLVRQNKFLLDSLMQTS 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 25630415 25640059 + ClCG07G009940.2 Cla07g00945 276933

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00945 332 PANTHER IQ-DOMAIN 5-RELATED 92 288 - -
Cla07g00945 332 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 92 288 - -
Cla07g00945 332 Coils Coil 178 198 - -
Cla07g00945 332 ProSiteProfiles IQ motif profile. 108 136 IPR000048 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00945 - - - cmo:103492919 380.948
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02298 Cla-Chr1:36827952 Cla07g00945 Cla-Chr7:25630415 5.28E-26 dispersed
Cla01g02299 Cla-Chr1:36831252 Cla07g00945 Cla-Chr7:25630415 3.65E-23 dispersed
Cla07g00945 Cla-Chr7:25630415 Cla09g01991 Cla-Chr9:37477381 3.40E-30 dispersed
Cla07g00945 Cla-Chr7:25630415 Cla05g02129 Cla-Chr5:32875646 2.08E-33 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g140 . . . . . . Bma10g00484 . Cmo16g00447 . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1038 Cone15ag1024 . . . . Blo07g00960 . Bda05g00781 . . Bpe03g00849 . . . . . . Cma16g00415 . Car16g00380 Cpe14g00349 . . . . . . . . Cla07g00945 Cam07g1020 Cec07g1090 Cco07g1069 Clacu07g0989 Cmu07g0985 Cre07g1360 . . Chy07g00958 Cme07g01328
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla09g01991 . 1 479 IQD Protein Family AT3G52290 53.8 1.4e-103 373.6
Cla03g01150 . 73 480 IQD Protein Family AT3G22190 57.8 3.4e-97 352.4
Cla05g01841 . 1 438 IQD Protein Family AT2G26180 61.6 4.0e-119 425.2
Cla07g00945 . 106 281 IQD Protein Family AT2G33990 55.3 3.1e-48 189.1
Cla07g00945 . 109 283 IQD Protein Family AT3G15050 62.4 7.5e-55 211.1
Cla01g00741 . 121 476 IQD Protein Family AT5G13460 50.3 1.6e-73 273.9
Cla06g00255 . 1 509 IQD Protein Family AT4G00820 51.4 7.8e-115 411.4
Cla06g00255 . 1 509 IQD Protein Family AT1G01110 50.1 2.5e-110 396.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011558 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla07g00945 Cla_Chr07 FPKM 0.0 0.0 3.72434 5.425126 6.064757 6.466646 6.205451 4.907239 3.951866 6.749553