Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00947 ATGGCTTCAGTGCTGCAAGGTGGTGGTGATGCGGGAGGGAATCCCAGAAGGACGGATAATGAAAAGTTTAGTGCCGGAAAGCAACAGAAAGAGAGTAAAATTGTTAAACACGTAGCTCGAAATTCCGTTCAGACTCCTACTGTCGCGGCCACTAATGGCGGTGGTAATCCGTCTTCTCCTTCTCATAATCCGATCGATGCTTTAATCACGTCCAGGGATTCTTCGGGTCAAAATCGCTGCATTGAACCGGTTAATGCTGAGGACGTGCCAGGATACACGAGGTTTCAGAACCGGGTTAGGATTAGTTTGAATTCCAGATCGAGGTCTGGGATTAAAGAGCTTACGACGAAGCTGAAGGGTGAGCTTGATCAGGTTAGGAGCCTCGTGAAGAAGTTTGAAACTCAGGAGCTCCAGTTTAGTGGTTATGGTGGTGATGTTGGACATAGTCAGTCACAGTTTTCAGCTAATAATTTGGTAGAGAGGGCTGGTACTGTTAGTACAATGAAGGTTAATTCCGAGGTGGGTTCTGCAGATGTGCCTGCTTCGAGGCTTGTTCGATGTGTTTCGGTGGCAGAAAACTTTGGAGAGTTTGCAGAGAAAGAGATGAGCAAGCATAAAAATTCAAAATATATTTCTACAAAGGAGTTCCCGACGGATTGTAATTTGAATGGAGGTAAGATTGGTCCAGTGCTTAAAAGCTGTAGTAATTTGCTGGAAAGATTGATGAAACATAAATTTGGTTGGGTATTTAATGTGCCTGTTGATGCAAAGCGTTTGGGGCTTCACGATTATCATAAGATCATAAGGAAGCCAATGGATTTGGGTACCATAAAGATGAGACTAAATAAAAATTGGTACAAGTCACCAAGAGAGTTTGCTGAGGATGTGAGACTAACGTTTAGCAATGCCATTACATATAACCCAAAAGGGGAGGATGTTCATACAATGGCAGAGCAGTTGTCTAAGATATTCGAAGAGAAATGGAAGATAATTGAAGGCAAACAAAATGTTGGTAAGGGATTTCAGATGGATGATGGTTCAGTTTTACCTACACCCACCTCTAGGAAATCTCCAGCTCTTGCCACTCCTCCAGTGGAATCGAGAACTTTCAGTAGATCGGATTCTACGACAAAGCCTCCACCTTCAAATAGAGGGATTTTAGGTAAATCGGATTCAATAACAAAACCCCCCAATCCCAAACAGAACCCCACAGATGTTGCTCCTCCTGATAAGAAACCAAAAGCAAAGAATCACGAAATCAGAGATATGACTTATGAAGAAAAACAGAAACTGAGCATTGACCTTCAGGATTTACCATCAGATAAGCTGAATAATGTTGTCAAGATTATCAAGAAAAGAAACCAGGGACTCTTCCAAAACGACGATGAAATTGAGTTGGATATTGGCAGGGTTGATTCCGAAACCTTATGGGAACTTGAGAGGTTTGTGGCAAATCACAAAAGAAGTTTGATCAAGAATAAGAGAAAAGCCGACGCGAATCTTCAATCAGGAGAAAAATGGTCTCACTACTCGACCAATGATACTGATCTAGCAATGGCTAATGCAGGAGGAAAACCTGTAGGTGGCAATGCAGGTAAAGTTATTGTCTTGATTTACCATAAAATTGTTGGCAACCCATCTGCACCCTGTCGATTAATGCTTTGTAGAACATATAATTTTAAGACTCTGAAAATGATAGTTCCTCGACATGTGGGGATGGAAATCAGTCTCCCTCAGGTTGAATTGACTAAATTAAGGTAA 1761 41.79 MASVLQGGGDAGGNPRRTDNEKFSAGKQQKESKIVKHVARNSVQTPTVAATNGGGNPSSPSHNPIDALITSRDSSGQNRCIEPVNAEDVPGYTRFQNRVRISLNSRSRSGIKELTTKLKGELDQVRSLVKKFETQELQFSGYGGDVGHSQSQFSANNLVERAGTVSTMKVNSEVGSADVPASRLVRCVSVAENFGEFAEKEMSKHKNSKYISTKEFPTDCNLNGGKIGPVLKSCSNLLERLMKHKFGWVFNVPVDAKRLGLHDYHKIIRKPMDLGTIKMRLNKNWYKSPREFAEDVRLTFSNAITYNPKGEDVHTMAEQLSKIFEEKWKIIEGKQNVGKGFQMDDGSVLPTPTSRKSPALATPPVESRTFSRSDSTTKPPPSNRGILGKSDSITKPPNPKQNPTDVAPPDKKPKAKNHEIRDMTYEEKQKLSIDLQDLPSDKLNNVVKIIKKRNQGLFQNDDEIELDIGRVDSETLWELERFVANHKRSLIKNKRKADANLQSGEKWSHYSTNDTDLAMANAGGKPVGGNAGKVIVLIYHKIVGNPSAPCRLMLCRTYNFKTLKMIVPRHVGMEISLPQVELTKLR 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 25663295 25667193 + ClCG07G009960.2 Cla07g00947 276935

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00947 586 PANTHER OSJNBA0053K19.4 PROTEIN 3 521 - -
Cla07g00947 586 MobiDBLite consensus disorder prediction 407 421 - -
Cla07g00947 586 Gene3D - 204 343 IPR036427 GO:0005515
Cla07g00947 586 ProSiteProfiles NET domain profile. 413 494 IPR027353 -
Cla07g00947 586 CDD Bromo_plant1 230 328 IPR037377 -
Cla07g00947 586 Pfam Bromodomain 234 318 IPR001487 GO:0005515
Cla07g00947 586 Gene3D - 416 496 IPR038336 -
Cla07g00947 586 MobiDBLite consensus disorder prediction 38 78 - -
Cla07g00947 586 PRINTS Bromodomain signature 295 314 IPR001487 GO:0005515
Cla07g00947 586 PRINTS Bromodomain signature 277 295 IPR001487 GO:0005515
Cla07g00947 586 PRINTS Bromodomain signature 261 277 IPR001487 GO:0005515
Cla07g00947 586 PRINTS Bromodomain signature 245 258 IPR001487 GO:0005515
Cla07g00947 586 MobiDBLite consensus disorder prediction 1 78 - -
Cla07g00947 586 SMART bromo_6 223 333 IPR001487 GO:0005515
Cla07g00947 586 Pfam Bromodomain extra-terminal - transcription regulation 423 484 IPR027353 -
Cla07g00947 586 PANTHER TRANSCRIPTION FACTOR GTE4-LIKE ISOFORM X1 3 521 - -
Cla07g00947 586 MobiDBLite consensus disorder prediction 347 400 - -
Cla07g00947 586 SUPERFAMILY Bromodomain 221 333 IPR036427 GO:0005515
Cla07g00947 586 MobiDBLite consensus disorder prediction 15 37 - -
Cla07g00947 586 MobiDBLite consensus disorder prediction 339 421 - -
Cla07g00947 586 ProSiteProfiles Bromodomain profile. 242 314 IPR001487 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00947 - - - bhj:120086113 944.495
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01760 Cla-Chr2:32540195 Cla07g00947 Cla-Chr7:25663295 1.41E-106 dispersed
Cla07g00947 Cla-Chr7:25663295 Cla10g00935 Cla-Chr10:22129447 1.87E-69 dispersed
Cla07g00947 Cla-Chr7:25663295 Cla09g01060 Cla-Chr9:11229252 1.11E-109 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g137 . . . . . . Bma10g00481 . Cmo16g00449 Cmo04g00605 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1035 Cone15ag1021 . . . . . . Bda05g00783 . . Bpe03g00850 . . . . . Cma04g00565 Cma16g00417 Car04g00536 Car16g00382 Cpe14g00351 Cpe01g00510 . . . . . . . Cla07g00947 Cam07g1022 Cec07g1092 Cco07g1071 Clacu07g0991 Cmu07g0987 Cre07g1362 . . Chy07g00961 Cme07g01330
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003323 2 4 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 9 1 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla07g00947 Cla_Chr07 FPKM 21.544975 22.461054 25.834105 28.061127 28.685793 28.178808 32.421173 33.864872 34.373249 45.387726