Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00950 ATGTTGAAGCAACTCTCTTTGAATCGACAAATTCATTCCGTTTTTCCAGTAGCATTGGCAGCTCTTCTCGTTGTAGGACTCGCTCGATTAGTCTTAGATGATCTCAAGAGTCATGGAAGCTTTGTGTTCAAAATGTATGGTCGACCGAGAAGCGAAAAGCATCGGCTACCAGTTGTTGTCTCTCCGAAAGACCTCATAGATGAAAACTGCAATTTGTTTGAAGGGAAATGGGAATGGGACAATGCATCATATCCTCTTTATGAAGAAGAGACATGTCCATTTTTGGTTAAACAAGTAACTTGCCAAAAGAATGGAAGACCTGATTCTTTCTACAAAAAATGGAGATGGCAACCTAATTCTTGCAATTTGCCAAGGTTTGATGCATTGAAATTGTTGGATATTTTGAGGGACAAAAGAATAATGTTTGTTGGGGATTCAATACAGAGAGGGCAGTTTGAATCAATGGTCTGCTTGGTTCAATCAGCCATTCCCAAAGGAAAGAAATCCCTTGAAAGAGTTCCTTCCAGGAAGATCTTCAAAGCTGAGGATTACAATGTATCAATTGAGTATTACTGGGCACCATTTATAGTTGAATCAATCTCTGATCATGCAACCAACCATACTGTGTTGAAAAGAATGGTGAAGCTTGATTCTATAGCCAACCATGGCAAGCACTGGAAAGGGGTTGATGTTTTGGTGTTTGAGAGCTATGTTTGGTGGAGATACAAACCCGTTATCAACGCCACGTATGGATCTCCAGAGGATGTAAGAGAGTATAATGTGAGCACAGCATATAGAATGGCAATGGAAACATGGGCAAATTGGCTAGAATCCAACATCAACCCTCACTCTCAGAAGGTCTTCTTCATGACAATGTCTCCAACACATTTGTGGAGCTGGGAATGGAGGGCAGGGAGTGATGAGAACTGCTTCAATGAGTCTCAACCAATTCACCATCCACACTGGGGAACTGGGTCAAGCACTGAGATAATGGAAATAATTCATGAAGTTATACAAGATCTCAAAGTAAATGTAACTTTATTAAACATTACACAGCTATCTGAGTTTCGAAAGGATGCTCATACATCGATTTACGGGGAGCGTCGAGGCAAGCTTTTGAGTAAAGAACAGAGATCTGATCCAAAAAATTTTGCAGATTGCATCCATTGGTGTTTGCCAGGAGTTCCTGATACATGGAATCAAATTTTGTATGCTCACTTGTTAAGAAACCATCAAAATCTTTCCTAG 1248 40.3 MLKQLSLNRQIHSVFPVALAALLVVGLARLVLDDLKSHGSFVFKMYGRPRSEKHRLPVVVSPKDLIDENCNLFEGKWEWDNASYPLYEEETCPFLVKQVTCQKNGRPDSFYKKWRWQPNSCNLPRFDALKLLDILRDKRIMFVGDSIQRGQFESMVCLVQSAIPKGKKSLERVPSRKIFKAEDYNVSIEYYWAPFIVESISDHATNHTVLKRMVKLDSIANHGKHWKGVDVLVFESYVWWRYKPVINATYGSPEDVREYNVSTAYRMAMETWANWLESNINPHSQKVFFMTMSPTHLWSWEWRAGSDENCFNESQPIHHPHWGTGSSTEIMEIIHEVIQDLKVNVTLLNITQLSEFRKDAHTSIYGERRGKLLSKEQRSDPKNFADCIHWCLPGVPDTWNQILYAHLLRNHQNLS 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 25693839 25697285 + ClCG07G009990.1 Cla07g00950 276938

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00950 415 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 123 406 IPR026057 GO:0016740
Cla07g00950 415 Pfam PMR5 N terminal Domain 69 122 IPR025846 -
Cla07g00950 415 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 9 409 IPR029962 GO:0016413
Cla07g00950 415 Coils Coil 404 415 - -
Cla07g00950 415 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 31 9 409 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00950 - - - csv:101210661 826.624
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00680 Cla-Chr4:21573844 Cla07g00950 Cla-Chr7:25693839 1.26E-99 dispersed
Cla04g00699 Cla-Chr4:21876103 Cla07g00950 Cla-Chr7:25693839 8.07E-121 dispersed
Cla07g00436 Cla-Chr7:5860845 Cla07g00950 Cla-Chr7:25693839 3.10E-107 dispersed
Cla07g00950 Cla-Chr7:25693839 Cla09g01063 Cla-Chr9:11242858 3.03E-88 dispersed
Cla07g00950 Cla-Chr7:25693839 Cla11g00584 Cla-Chr11:6609316 4.68E-124 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g133 . . . . . . . Bma13g00934 Cmo16g00453 . . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag1016 . . . . . . . . . . . . . . . . Cma16g00420 . Car16g00385 Cpe14g00355 . . . . . . . . Cla07g00950 Cam07g1025 Cec07g1095 Cco07g1074 Clacu07g0994 Cmu07g0990 Cre07g1365 . . Chy07g00964 Cme07g01334
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012140 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla07g00950 Cla_Chr07 FPKM 15.699554 16.492233 11.519884 11.577046 21.358097 19.796322 19.992943 12.174347 9.768518 14.055482