Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00964 ATGAAGATTCAGTGTAACGTCTGCGAGATGGCTGAGGCGACCGTTCTGTGTTGTGCTGATGAGGCGGCGCTGTGCTGGGCTTGCGACGAGAAGATTCATGCAGCCAACAAGCTCGCAAGCAAGCACCAGAGAGTTCCTCTCTCTGGCTCTTCATCTCAGATGCCTAAATGCGATATCTGCCAGGAAGCTAGTGGCTATATCTTCTGTTTAGAGGATCGAGCATTACTTTGCAGAAAGTGTGATGTTGCTATACACACAGCAAATACTTATGTAACTGGTCATCAGCGCTTTCTACTTACTGGTGTGAAAGTGGCACTCGAGCCAACTGACCCCGTTGCTTGTTCTTCCATGGATAAGTCACATTCTCGAGAGAAGTTCACTGAGACTAAAGTTAGACCACTGTCCGAAAGGGAATTCTCGATGCCTTCTCCTGATGAACTCAGTAGAAGCTTGTCTGTACTAGGTGGATCTGAGGACTTTATGGCAAATAGAACATTGCTTACCGGAGGCGGAGATTCTATTTCTGGTGGTTTTTCACAGTGGCAAATGGATGAACTTATTAATCTGACTGGATTCAATCAGAACTATGGGTATATGGATAACGGATCATCCAAGGCTGATAGTGGTAAGCTTGGGGATTCTGATTCATCACCAGTTTTGAGAGCTGCTGACATCGAACTGGACGATGACACTGAATGCTCGGGTCAGGTTCCAGAGGCTTCCTGGACAGTGCCTCAGATTCCCTCTCCACCCACAGCGTCAGGCTTATACTGGCCAAGAAGTTACCATAATTCTATGGATGGTGCTGTTTTTGTTCCTGACATCTCCTGTTCTTCAGAAAAGGTTCAACATTGCTCACATAATGGTACCTTCTCGAAACGAAGAAGACAGTTCTAG 897 46.38 MKIQCNVCEMAEATVLCCADEAALCWACDEKIHAANKLASKHQRVPLSGSSSQMPKCDICQEASGYIFCLEDRALLCRKCDVAIHTANTYVTGHQRFLLTGVKVALEPTDPVACSSMDKSHSREKFTETKVRPLSEREFSMPSPDELSRSLSVLGGSEDFMANRTLLTGGGDSISGGFSQWQMDELINLTGFNQNYGYMDNGSSKADSGKLGDSDSSPVLRAADIELDDDTECSGQVPEASWTVPQIPSPPTASGLYWPRSYHNSMDGAVFVPDISCSSEKVQHCSHNGTFSKRRRQF 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 25824123 25826922 - ClCG07G010120.1 Cla07g00964 276952

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00964 298 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 297 - -
Cla07g00964 298 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cla07g00964 298 SMART bboxneu5 52 99 IPR000315 GO:0008270
Cla07g00964 298 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Cla07g00964 298 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Cla07g00964 298 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Cla07g00964 298 Gene3D Classic Zinc Finger 1 92 - -
Cla07g00964 298 CDD Bbox1_BBX-like 5 47 - -
Cla07g00964 298 PANTHER B-BOX ZINC FINGER PROTEIN 18 1 297 - -
Cla07g00964 298 CDD Bbox1_BBX-like 56 99 - -
Cla07g00964 298 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cla07g00964 298 MobiDBLite consensus disorder prediction 125 146 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00964 - - - bhj:120091143 595.89
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01962 Cla-Chr1:34257220 Cla07g00964 Cla-Chr7:25824123 5.21E-25 dispersed
Cla06g00088 Cla-Chr6:893819 Cla07g00964 Cla-Chr7:25824123 1.45E-08 dispersed
Cla06g01299 Cla-Chr6:26345424 Cla07g00964 Cla-Chr7:25824123 1.41E-09 dispersed
Cla07g00792 Cla-Chr7:22217315 Cla07g00964 Cla-Chr7:25824123 3.32E-11 dispersed
Cla07g00964 Cla-Chr7:25824123 Cla11g00377 Cla-Chr11:4256371 1.51E-36 dispersed
Cla07g00964 Cla-Chr7:25824123 Cla08g01445 Cla-Chr8:27322483 5.41E-35 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla08g01382 . 37 368 C2C2-CO-like Transcription Factor Family AT5G15850 50.6 1.7e-41 167.2
Cla08g01382 . 32 368 C2C2-CO-like Transcription Factor Family AT5G24930 61.7 3.7e-84 308.9
Cla06g01299 CCT 20 374 C2C2-CO-like Transcription Factor Family AT5G24930 50.8 1.3e-57 220.7
Cla06g01299 CCT 1 374 C2C2-CO-like Transcription Factor Family AT5G57660 50.7 1.8e-67 253.4
Cla08g01382 . 33 368 C2C2-CO-like Transcription Factor Family AT5G57660 51.0 5.1e-54 208.8
Cla02g00307 . 1 407 C2C2-CO-like Transcription Factor Family AT3G07650 54.5 1.8e-89 326.6
Cla02g00307 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 55.3 1.8e-86 316.6
Cla02g00307 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 55.3 1.8e-86 316.6
Cla02g00492 . 1 208 C2C2-CO-like Transcription Factor Family AT1G75540 54.7 8.4e-51 198.0
Cla11g00377 CCT,ECH 1 184 C2C2-CO-like Transcription Factor Family AT1G75540 52.5 8.4e-43 171.4
Cla07g00964 . 1 298 C2C2-CO-like Transcription Factor Family AT1G78600 50.6 1.9e-76 283.1
Cla01g01962 . 1 107 C2C2-CO-like Transcription Factor Family AT2G21320 81.3 5.9e-48 187.6
Cla01g01962 . 1 114 C2C2-CO-like Transcription Factor Family AT4G38960 79.1 5.7e-49 191.0
Cla02g00492 . 1 198 C2C2-CO-like Transcription Factor Family AT4G39070 60.4 8.3e-56 214.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005660 1 1 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61432 PF00643 zf-B_box 3.60E-07 No_clan Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla07g00964 Cla_Chr07 FPKM 62.437313 65.273621 13.830627 13.919075 5.288512 6.086263 5.518393 1.033837 0.845965 0.529596