Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00964 ATGAAGATTCAGTGTAACGTCTGCGAGATGGCTGAGGCGACCGTTCTGTGTTGTGCTGATGAGGCGGCGCTGTGCTGGGCTTGCGACGAGAAGATTCATGCAGCCAACAAGCTCGCAAGCAAGCACCAGAGAGTTCCTCTCTCTGGCTCTTCATCTCAGATGCCTAAATGCGATATCTGCCAGGAAGCTAGTGGCTATATCTTCTGTTTAGAGGATCGAGCATTACTTTGCAGAAAGTGTGATGTTGCTATACACACAGCAAATACTTATGTAACTGGTCATCAGCGCTTTCTACTTACTGGTGTGAAAGTGGCACTCGAGCCAACTGACCCCGTTGCTTGTTCTTCCATGGATAAGTCACATTCTCGAGAGAAGTTCACTGAGACTAAAGTTAGACCACTGTCCGAAAGGGAATTCTCGATGCCTTCTCCTGATGAACTCAGTAGAAGCTTGTCTGTACTAGGTGGATCTGAGGACTTTATGGCAAATAGAACATTGCTTACCGGAGGCGGAGATTCTATTTCTGGTGGTTTTTCACAGTGGCAAATGGATGAACTTATTAATCTGACTGGATTCAATCAGAACTATGGGTATATGGATAACGGATCATCCAAGGCTGATAGTGGTAAGCTTGGGGATTCTGATTCATCACCAGTTTTGAGAGCTGCTGACATCGAACTGGACGATGACACTGAATGCTCGGGTCAGGTTCCAGAGGCTTCCTGGACAGTGCCTCAGATTCCCTCTCCACCCACAGCGTCAGGCTTATACTGGCCAAGAAGTTACCATAATTCTATGGATGGTGCTGTTTTTGTTCCTGACATCTCCTGTTCTTCAGAAAAGGTTCAACATTGCTCACATAATGGTACCTTCTCGAAACGAAGAAGACAGTTCTAG 897 46.38 MKIQCNVCEMAEATVLCCADEAALCWACDEKIHAANKLASKHQRVPLSGSSSQMPKCDICQEASGYIFCLEDRALLCRKCDVAIHTANTYVTGHQRFLLTGVKVALEPTDPVACSSMDKSHSREKFTETKVRPLSEREFSMPSPDELSRSLSVLGGSEDFMANRTLLTGGGDSISGGFSQWQMDELINLTGFNQNYGYMDNGSSKADSGKLGDSDSSPVLRAADIELDDDTECSGQVPEASWTVPQIPSPPTASGLYWPRSYHNSMDGAVFVPDISCSSEKVQHCSHNGTFSKRRRQF 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 25824123 25826922 - ClCG07G010120.1 Cla07g00964 276952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00964 298 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 297 - -
Cla07g00964 298 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cla07g00964 298 SMART bboxneu5 52 99 IPR000315 GO:0008270
Cla07g00964 298 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Cla07g00964 298 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Cla07g00964 298 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Cla07g00964 298 Gene3D Classic Zinc Finger 1 92 - -
Cla07g00964 298 CDD Bbox1_BBX-like 5 47 - -
Cla07g00964 298 PANTHER B-BOX ZINC FINGER PROTEIN 18 1 297 - -
Cla07g00964 298 CDD Bbox1_BBX-like 56 99 - -
Cla07g00964 298 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cla07g00964 298 MobiDBLite consensus disorder prediction 125 146 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01962 Cla-Chr1:34257220 Cla07g00964 Cla-Chr7:25824123 5.21E-25 dispersed
Cla06g00088 Cla-Chr6:893819 Cla07g00964 Cla-Chr7:25824123 1.45E-08 dispersed
Cla06g01299 Cla-Chr6:26345424 Cla07g00964 Cla-Chr7:25824123 1.41E-09 dispersed
Cla07g00792 Cla-Chr7:22217315 Cla07g00964 Cla-Chr7:25824123 3.32E-11 dispersed
Cla07g00964 Cla-Chr7:25824123 Cla11g00377 Cla-Chr11:4256371 1.51E-36 dispersed
Cla07g00964 Cla-Chr7:25824123 Cla08g01445 Cla-Chr8:27322483 5.41E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61432 PF00643 zf-B_box 3.60E-07 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00964 - - bhj:120091143 595.89