Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00980 ATGTCTCTTCGCAGATCCTTTCTCTCTCGGAAGTTTTCTTCCAAGTCCTCCTCTAGAGATCCCAATGCTCTTGGGGGAATTCTTCCGTTGTCCGCCTCGGACTTCGATCATGCCTCCGCTCTGCCCGGAGGGAGTGGCGGCGATCGGATGCAGGCTGAATCCGCTTGGTCTTCCATGCTACCCGAGCTTCTTCGCGAGATCATTCAGCGGGTTGAGGCTTCAGAAGACGCTTGGCCTAACCGCCACACCGTTGTTTCCTGTGCTTGTGTCTGTAAGCGTTGGCGGGATATTACTAAAGAGATCGTCAGGGCCACACCTCATTCCGGGAAAATTACTTTCCCTTCTTGCCTCAAACAGCCTGGACCAAGTGATCTTCCACATCAGTGTCTCATAAAAAGGAACAAGAAGACTTCAACATTTTTCCTTTATCTTGCCCTTACACCATCATTGACAGATGAGGGAAAATTCCTCTTAGCTGCACGGAGATATAGGCATGGAGCTCATACTGAGTATATAATATCTCTTGATGCTGAAGACTTATCCCAAGGAAGCAATGCCTATGTGGGGAAGTTAAGCTCCGATTTTCTTGGCACCAACTTTACCATTTATGACAGTCAACCACCACATAACGGTGCAAAGCCATCAAGTAGTAAATCAAGCCGCCGCTTTGCAAGCAAGCAAATTAGCCCACAAGTGTCTGCAGGTAACTTTGAGGTTGGGCAAGTCTCTTACAAATTTAATCTTTTGAAATCGAGAGGCCCAAGGCGAATGATATGCTCTCTAAAGTGCCCAGTATCAGAAGACACTGGAACCAGCAAACCTTGTGAGAACTCGAAGATGAAGAAATCCGAATCTCTTTCTTCCTTATCTGGGTTGACAATCTTAAGAAACAAGGCTCCTAGGTGGCATGAGCACCTGCAATGCTGGTGCTTGAATTTTCATGGTCGGGTTACAGTAGCATCTGTTAAAAACTTTCAACTCGTCGCTACTATTGACCATAGCCAGCCAGGAGGTAAAGGGGATGAAGAAACAGTTCTACTACAGTTTGGAAAGGTAGGCGACGATATGTTTACTATGGATTATAGGCAGCCATTATCAGCTTTCCAGGCTTTCGCCATTTGCCTTACGAGCTTTGGCACGAAGCTGGCCCTTCTTTTCTGGGCCGAAAGTGAAAAAGGCCGAGGGCCCATTAACGGAAAACTCCCCGATCGGCAGAAGCTCCGAGGGATCTTCTCTCTTCTGCAACGAGTTCGTTTTCGGGAAGCCGAAGTGGAAACAACGATGGAAGCAAAAAGGCGATCGAAGATGAGGATCGCCATAATCCACCCAGACCTTGGTATAGGGGGAGCTGAGAGATTGATTGTGGATGCTGCTGTTGAACTTGCTTCGCATGGACATGATGTCCATATTTTTACATCGCACCACGATAAAAATCGGTGCTTTGAGGAGACCCTTGCTGGAACGTTTCCAGTTACTGTGTATGGTGATTTCCTACCTCGCCACATCTTTTACCGCCTCCATGCAGTTTGTGCATATCTACGGTGTATTTTTGTCACTCTTTGCATGCTGTTCATGTGGCCATCTATTGATGTCATACTAGCAGATCAGGTTTCTGTTGTTGTTCCAATACTTAAGCTAAAAAGGTCATCAAAGGTTGTATTTTATTGTCATTTTCCGGATCTCTTACTGGCCAAGCACACGACCATTTTGAGGAGGCTGTACAGAAAACCCATAGACTTCATCGAAGAATTGACAACCGGCATGGCAGATTTGATATTGGTTAATAGCAAATTTACGGCGTCCACTTTTGCCAAGACATTCAAACATCTTAATGCACAAGGAATTCGACCTGCTGTTCTTTATCCAGCTGTCAATGTAGATCAGTTGAGTTTTCTTTCTATCAACCGTTTTGAAAGGAAGAAAAACATTGAATTAGCTATCTCAGCCTTTGCTAAGCTTGGCACACTTGGAGGAGGCACTTTTCAAGATTACAATGTAGCTGATGTTTCCTTGGTCATTGCTGGCAAGTCTGGACTTTTCTCCTAG 2046 45.6 MSLRRSFLSRKFSSKSSSRDPNALGGILPLSASDFDHASALPGGSGGDRMQAESAWSSMLPELLREIIQRVEASEDAWPNRHTVVSCACVCKRWRDITKEIVRATPHSGKITFPSCLKQPGPSDLPHQCLIKRNKKTSTFFLYLALTPSLTDEGKFLLAARRYRHGAHTEYIISLDAEDLSQGSNAYVGKLSSDFLGTNFTIYDSQPPHNGAKPSSSKSSRRFASKQISPQVSAGNFEVGQVSYKFNLLKSRGPRRMICSLKCPVSEDTGTSKPCENSKMKKSESLSSLSGLTILRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATIDHSQPGGKGDEETVLLQFGKVGDDMFTMDYRQPLSAFQAFAICLTSFGTKLALLFWAESEKGRGPINGKLPDRQKLRGIFSLLQRVRFREAEVETTMEAKRRSKMRIAIIHPDLGIGGAERLIVDAAVELASHGHDVHIFTSHHDKNRCFEETLAGTFPVTVYGDFLPRHIFYRLHAVCAYLRCIFVTLCMLFMWPSIDVILADQVSVVVPILKLKRSSKVVFYCHFPDLLLAKHTTILRRLYRKPIDFIEELTTGMADLILVNSKFTASTFAKTFKHLNAQGIRPAVLYPAVNVDQLSFLSINRFERKKNIELAISAFAKLGTLGGGTFQDYNVADVSLVIAGKSGLFS 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 25993606 26003997 - ClCG07G010275.1 Cla07g00980 276968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00980 681 Pfam F-box domain 56 102 IPR001810 GO:0005515
Cla07g00980 681 PRINTS Tubby superfamily signature 171 187 IPR000007 -
Cla07g00980 681 PRINTS Tubby superfamily signature 342 361 IPR000007 -
Cla07g00980 681 PRINTS Tubby superfamily signature 187 211 IPR000007 -
Cla07g00980 681 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Cla07g00980 681 PRINTS Tubby superfamily signature 295 312 IPR000007 -
Cla07g00980 681 PRINTS Tubby superfamily signature 363 385 IPR000007 -
Cla07g00980 681 PRINTS Tubby superfamily signature 313 329 IPR000007 -
Cla07g00980 681 Gene3D Tubby Protein; Chain A 112 384 IPR025659 -
Cla07g00980 681 SUPERFAMILY Tubby C-terminal domain-like 107 384 IPR025659 -
Cla07g00980 681 ProSitePatterns Tub family signature 1. 313 326 IPR018066 -
Cla07g00980 681 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 436 675 - -
Cla07g00980 681 Pfam Tub family 117 380 IPR000007 -
Cla07g00980 681 Gene3D Glycogen Phosphorylase B; 432 631 - -
Cla07g00980 681 Pfam Glycosyltransferase Family 4 447 627 IPR028098 -
Cla07g00980 681 PANTHER TUBBY-LIKE F-BOX PROTEIN 7 1 383 - -
Cla07g00980 681 MobiDBLite consensus disorder prediction 205 225 - -
Cla07g00980 681 PANTHER TUBBY-RELATED 1 383 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00980 Cla-Chr7:25993606 Cla08g00355 Cla-Chr8:8941658 1.07E-121 dispersed
Cla07g00980 Cla-Chr7:25993606 Cla06g00505 Cla-Chr6:6119251 8.19E-130 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61434 PF01167 Tub 7.80E-103 CL0395 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00980 K19600 - csv:101211968 662.144