Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00986 ATGAAGGCAATTTCACGTTCCCCGTTGCCGGAAAACTTCCTCAGACTACCAATAAAGTCAACCAATTTCCCTTCCCCACGTCTTCAATTCACAAATCCACAAAACCCTTCAAATTCTAGACCCCCACTTCCGCGTTTCTCCATCGATTCATCCAAATCTCCAACCCCACTGACCCCCGTCGGGCCACCGCCGTTGGTCGTCGTCGGCTCGGCCAATGCCGACATCTACGTGGAGATCGACCGGCTGCCGGAGGAGGGAGAGACTATCTCCGCCAGGAGTGGCCAGACTCTGGCCGGCGGGAAGGGGGCCAATCAGGCCTGCTGCGGAGGCAAGCTCGAGTACCCAACTTACTTTGTGGGTCAGGTTGGTGAGGATGCTCATGGGAAGTTGATCACGGCGGCACTTGAGGACGGTGGCGTCCGGCTTGATCATTTGGCTACTGTGGCGGAAGCGCCGACGGGCCACGCGGTGGTGATGCTGCAGTCTGGTGGGCAGAATTCTATCATCATTGTTGGTGGTGCTAATATGAATTGTTGGCCTGACGCCTTGTCTGACAGTGATTTGGAGGTTATAAGAAATGCTGGGATCGTTCTGCTTCAGAGGGAGATTCCTGATTCAGTCAATATCCAAGTTGCAAAGTCCAGCAACTGCAATTTAGAACTGGTTGCTATTTCTGTAAACATGGAATCGAAGGACCACTCTGAAAGATTTTCTGGTGCAGCAGCCGTACAGTCAACAAATTTGGGACGAGTCGACGCCCCTATCCCACAAGAACTGCTTGACCATGTTGATATTTTTAGTCCAAATGAAAGCGAGCTAAGTCGCTTGACAGGATGCCCAACTGAAAGTTTTGAACAAATTGTACAAGCTGTAGAAAAATGCTATAAAATGGGTGTCAAGCAAGTTCTTGTAAAACTTGGGGCCAAAGGATCTGCTTTTTTTACACAAGGGGGAAAACCAATCAGACAACCAATTATATCAGCCGCGAAAGTACTTGATACTACTGGAGCTGGCGATACTTTCACCGCATCTTTTGCTGTGGCACTCGTCGAAGGAAAGTCGAAGGAGGAATGCCTGAAATTTGCTGCTGCTGCAGCCTCACTTTGTGTTCAAGTGAAGGGGGCCATTCCCAGCATGCCTGATAGGGAATCAGTGCTGAATCTCCTTCAGTCTGTTTGA 1179 50.04 MKAISRSPLPENFLRLPIKSTNFPSPRLQFTNPQNPSNSRPPLPRFSIDSSKSPTPLTPVGPPPLVVVGSANADIYVEIDRLPEEGETISARSGQTLAGGKGANQACCGGKLEYPTYFVGQVGEDAHGKLITAALEDGGVRLDHLATVAEAPTGHAVVMLQSGGQNSIIIVGGANMNCWPDALSDSDLEVIRNAGIVLLQREIPDSVNIQVAKSSNCNLELVAISVNMESKDHSERFSGAAAVQSTNLGRVDAPIPQELLDHVDIFSPNESELSRLTGCPTESFEQIVQAVEKCYKMGVKQVLVKLGAKGSAFFTQGGKPIRQPIISAAKVLDTTGAGDTFTASFAVALVEGKSKEECLKFAAAAASLCVQVKGAIPSMPDRESVLNLLQSV 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26059501 26062980 + ClCG07G010350.2 Cla07g00986 276974

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00986 392 Gene3D - 62 391 IPR029056 -
Cla07g00986 392 MobiDBLite consensus disorder prediction 18 55 - -
Cla07g00986 392 Hamap Ribokinase [rbsK]. 63 387 IPR011877 GO:0004747|GO:0006014
Cla07g00986 392 Pfam pfkB family carbohydrate kinase 65 381 IPR011611 -
Cla07g00986 392 PANTHER SUGAR KINASE 63 391 - -
Cla07g00986 392 MobiDBLite consensus disorder prediction 16 60 - -
Cla07g00986 392 SUPERFAMILY Ribokinase-like 64 389 IPR029056 -
Cla07g00986 392 CDD ribokinase 70 381 IPR011877 GO:0004747|GO:0006014
Cla07g00986 392 PRINTS Ribokinase signature 67 88 IPR002139 GO:0016301
Cla07g00986 392 PRINTS Ribokinase signature 302 313 IPR002139 GO:0016301
Cla07g00986 392 PRINTS Ribokinase signature 166 179 IPR002139 GO:0016301
Cla07g00986 392 PRINTS Ribokinase signature 94 113 IPR002139 GO:0016301
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00986 K00852 rbsK, RBKS; ribokinase [EC:2.7.1.15] - csv:101213654 635.95
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00986 Cla-Chr7:26059501 Cla08g01471 Cla-Chr8:27620889 2.16E-09 dispersed
Cla07g00986 Cla-Chr7:26059501 Cla10g01926 Cla-Chr10:35101009 1.96E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g16 . . . . Bpe09g00272 . . Bma13g00918 . Cmo04g00703 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00718 . . . . . . . . . . . . . . . . . . . . . . Cla07g00986 Cam07g1059 Cec07g1130 Cco07g1107 Clacu07g1031 Cmu07g1024 Cre07g1401 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009964 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 4 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla07g00986 Cla_Chr07 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0