Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00987 ATGGCAATTTTTATGTATAACTATCATGTTTTCAATGGTGATGTATTGGATGCCAAAGAAATAAACTTTTTTACTGAATATGGGGATGCTAACAGATATAAGATTCTTGAAGTTGTTGGAAGGGGAAGTTATGGAGTTGTTTGTTCTGCTATTGACATGCAAACTGGGGAGAAAGTTGCAATAAAGAGAATTCATGATATTTTTGATCACGCATCTGATGCTATTCGAATCCTTCGTGAAGTTAAGTTGCTTAGATTGTTGCGGCATCCTGATATTGTTGACATCAAGCGTATTATGGTACCACCTTCTAAAAAGGAATTTAGGGACATTTATGTGGTTTTTGAGCTTATGGAATCTGATCTTCATCAAGTTATTAAAGCAAATGATGACTTGACGCGTGAACATCATCAATTTTTCCTCTATCAAATGCTACGTGCATTGAAATTCATGCATACAGCAAATGTGTATCATAGAGATCTGAAGCCGAAGAATATATTGGCAAATGCGAATTGCAAGCTTAAAATTTGTGATTTTGGGCTTGCAAGAGTTGCTTTCAGTGACACCCCAACTACTGTATTTTGGACAGACTATGTTGCTACTCGATGGTACAGAGCTCCAGAGTTGTGTGGATCATTCTGTTCCAAGTATACTCCTGCGATAGATATTTGGAGTGTCGGCTGCATATTTGCTGAGGTTTTGATGGGGAAGCCACTGTTTCCGGGTAAAAGCGTTGCCCATCAATTGGACTTGATTACTGATCTTCTTGGGACTCCCTCATTGGAAACCATTGCAGGAGTTCGGAATGAAAAGGCCAGGAAATATTTGACAGAAATGAGAAAGAAATCTGCAGTGCCATTTTCACAAAGATTTCCTAATGCAGATCCTACAGCCATCCGCTTATTGCAAAGACTATTAGCATTTGATCCAAAGGATCGACCATCGGCTGTGGAGGCTCTGGCTGATCCTTACTTTAAGGGCCTAGCTAAAGTTGAAAGAGAGCCTTCTTGTCAACCAATCTCAAGAGCGGAATTTGAGTTTGAGAGACGGAAATTAACAAGGGATGATGTGAGGGAATTGTTATACAGAGAAATATTAGAATATCATCCTCAAATTCGTGAAGATTACTTGAATGGAACTGAGACTTCAAAGCTCCTTTATCCTAGCGTTACAGGTCATTTTAAAAGCCAATTCACCTTCCACAAGGAGAATAACGGTAAAAGCGCACCTGTTTTGCCTCTAGAACGGAAACACTTCTCCCTGCCACGGTCCACTGTTTGCACAAATTTGGCTTCACCTGATCGTGAACCTGTTCGACGAAATCCCAAAGTCTTTAATAATAGTATGGGATTACCTGATAGAAAATTTGTGAATCCATCCAAGGCTCATCCTCCACCTAAAGTGCCTACTGGACGAGTTGCTGGGCCTGTCCTCCCTTATGAGCACAGAAACATAAAAGATGTTTATTCGAACCTAACGTCACAGATTAGAAAGCCTCGCATGGTTGTTCGCTTGCCTGAAACTGACCATTATTACCCGGCATGGGCAGCAGTCATCCATAGAATGATTCATCCATTAAAGAACTTAAGAGGCTGTTGCAGGCAAAGCTTAAGTTGGGAGTGGCAGCCATTGCCATTGCTGCTCATTGAAGTAACTGAGATAGGCATAACCAACAGTAGGCTGGTTGCAGCTCCACCACTAAACTCCGAAGAAGCTGTAGATTTGTCGCCTACTTACAAGGCGCTTAGGCATCATACGCGGCCCATTGTTGCTTCTCAAACCAAAAGAAAATACTTTCTCTTGGAACGATGTCTGTCATATGCCAGAGTCTTGATTTTGGAAGGCATGTTTTGGATTATGTTGCTTGTGGTTGTTCCTCCAATACTCCATTGGATCCACATACGGTTAGGAGTCATGTCAAACTGTCTACTAAGAAAAGAAGCGACACCAAACTCGAACTTCGATTTGTTCCCGACGAAAGGTTGGCCAGTGCAGAGTGTTTTCAACTACGAAAGCAGAAACTATTTTGAATGGCAAGTGAACTTTTGGGATTTGGCAGCTCCTTTATCTCAATGGTTGGTTGCTAAAGCTTGCGACATTACTGGTGGTCCTCAACCGTTCTTCGATCTGAGGAAGGAGTCCAGAAGCCCAATCTCATCGACAAGTTTGTTTGAAGTTGTAGCCGATGATCTCCAGAAGCTTAACCAAAATCTCCTGTCTATGGTTGGTAAGGAGAACCCAGCCTTGGTATCTGCTGCTCAGCGGATATTTGGTGCTGGAGGGAAGAGGATGAGACCAGCTCTGGTATTCCTGGTGTCAAGAGCAACGGCCGGATTGGTTGGGTTAGAGGAACTCACTGTGGAGCATCGGAGTTTGGCAGAGATCATTGAGATGATCCACACTGCAAGCTTGATACATGATGATGTGTTAGATGATAGTGATATGAGGAGAGGGAAGGAAACCTTGCATCAATTATACGGTACCAGAGTGGCGGTGCTGGCTGGAGATTTCATGTTTGCACAGTCATCGTGGTGTCTTGCTAATCTTGAAAACCTTGAAGTCATTAAGCTTATCAGTCAGGTTATTAAAGATTTTGCAAGTGGTGAAATAAAGCAGGCGTCAAGCCTGTTTGATTGTGCGGTTGAGCTGGATGAATATTTGATCAAAAGCTATTATAAAACAGCTTCCTTGATTGCTGCTAGTACCAAAGGTGCTGCGATCTTTAGTGGGGTTGATCGGGATATGACCGAGAAAATGTACGAGTATGGAAAGAATCTTGGTCTCTCATTCCAAATTGTCGATGACATATTGGACTTTACACAATCAACAAAGCAGCTTGGGAAGCCAGCGGGAAGTGATCTGGCTAAAGGAAATCTGACAGCCCCAGTTATATTTGCTCTGGAGAGAGAGCCGAAATTGAAAGACATTATTGAATCAGAATTCAATGAGCCGGGGTCTCTCGAAGAAGCCATCCGCATAGTCAAGAGCAGTGGTGGCATTGAAAGAGCGCAGGAATTAGCTAAACAAAAGGCTGATCTTGCTATCCAAAACCTACAATGCCTTCCACAAAGTACCTTTCGGTTAGCGCTCGAGGATATGGTGTATGGCCCTAGCATGCTCCCAACCTTGCATCTGACCGGCGATGTTCTTTTGGCCGAGCACGTGTCGCACCGAGTGGGCAGGGTTGGCCCTGGCGACGTTGTGCTGGTTCGCTCTCCTCTGAACCCGAGGAAGACGTTGACGAAGCGCATTCTGGGCGTCGAGGGTGATAAGGTCAATTTCTTTCCGGACCCTGCCAATTCCAATCGGTATCAGTCGGCTGTGGTTCCGAAAGGGCATGTGTGGATTCAAGGAGATAATGTGTATGCTTCTAGTGATTCGCGGCATTTCGGGCCTGTACCTTACGGTCTGGCCACCAGATTGTTTTGGACCATTGGAACAATGAACTCAGATATACCGAACTTAAAAGATAAATTGCTGGACTTCATTTCGTGGCTATTCTAA 3501 43.62 MAIFMYNYHVFNGDVLDAKEINFFTEYGDANRYKILEVVGRGSYGVVCSAIDMQTGEKVAIKRIHDIFDHASDAIRILREVKLLRLLRHPDIVDIKRIMVPPSKKEFRDIYVVFELMESDLHQVIKANDDLTREHHQFFLYQMLRALKFMHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTVFWTDYVATRWYRAPELCGSFCSKYTPAIDIWSVGCIFAEVLMGKPLFPGKSVAHQLDLITDLLGTPSLETIAGVRNEKARKYLTEMRKKSAVPFSQRFPNADPTAIRLLQRLLAFDPKDRPSAVEALADPYFKGLAKVEREPSCQPISRAEFEFERRKLTRDDVRELLYREILEYHPQIREDYLNGTETSKLLYPSVTGHFKSQFTFHKENNGKSAPVLPLERKHFSLPRSTVCTNLASPDREPVRRNPKVFNNSMGLPDRKFVNPSKAHPPPKVPTGRVAGPVLPYEHRNIKDVYSNLTSQIRKPRMVVRLPETDHYYPAWAAVIHRMIHPLKNLRGCCRQSLSWEWQPLPLLLIEVTEIGITNSRLVAAPPLNSEEAVDLSPTYKALRHHTRPIVASQTKRKYFLLERCLSYARVLILEGMFWIMLLVVVPPILHWIHIRLGVMSNCLLRKEATPNSNFDLFPTKGWPVQSVFNYESRNYFEWQVNFWDLAAPLSQWLVAKACDITGGPQPFFDLRKESRSPISSTSLFEVVADDLQKLNQNLLSMVGKENPALVSAAQRIFGAGGKRMRPALVFLVSRATAGLVGLEELTVEHRSLAEIIEMIHTASLIHDDVLDDSDMRRGKETLHQLYGTRVAVLAGDFMFAQSSWCLANLENLEVIKLISQVIKDFASGEIKQASSLFDCAVELDEYLIKSYYKTASLIAASTKGAAIFSGVDRDMTEKMYEYGKNLGLSFQIVDDILDFTQSTKQLGKPAGSDLAKGNLTAPVIFALEREPKLKDIIESEFNEPGSLEEAIRIVKSSGGIERAQELAKQKADLAIQNLQCLPQSTFRLALEDMVYGPSMLPTLHLTGDVLLAEHVSHRVGRVGPGDVVLVRSPLNPRKTLTKRILGVEGDKVNFFPDPANSNRYQSAVVPKGHVWIQGDNVYASSDSRHFGPVPYGLATRLFWTIGTMNSDIPNLKDKLLDFISWLF 1166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26083570 26097950 + ClCG07G010360.2 Cla07g00987 276975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00987 1166 SUPERFAMILY Terpenoid synthases 720 1033 IPR008949 -
Cla07g00987 1166 ProSitePatterns Polyprenyl synthases signature 2. 925 937 IPR033749 -
Cla07g00987 1166 SUPERFAMILY LexA/Signal peptidase 1033 1143 IPR036286 -
Cla07g00987 1166 ProSitePatterns Signal peptidases I signature 3. 1113 1126 IPR019758 GO:0004252|GO:0016021
Cla07g00987 1166 PRINTS Bacterial leader peptidase 1 (S26A) family signature 1108 1127 IPR000223 GO:0006508|GO:0008236|GO:0016020
Cla07g00987 1166 PRINTS Bacterial leader peptidase 1 (S26A) family signature 1026 1042 IPR000223 GO:0006508|GO:0008236|GO:0016020
Cla07g00987 1166 PRINTS Bacterial leader peptidase 1 (S26A) family signature 1079 1091 IPR000223 GO:0006508|GO:0008236|GO:0016020
Cla07g00987 1166 ProSitePatterns MAP kinase signature. 68 171 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cla07g00987 1166 ProSitePatterns Protein kinases ATP-binding region signature. 39 62 IPR017441 GO:0005524
Cla07g00987 1166 CDD STKc_TDY_MAPK 32 369 - -
Cla07g00987 1166 Gene3D Transferase(Phosphotransferase) domain 1 119 347 - -
Cla07g00987 1166 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 18 450 - -
Cla07g00987 1166 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 19 18 450 - -
Cla07g00987 1166 SUPERFAMILY Protein kinase-like (PK-like) 28 328 IPR011009 -
Cla07g00987 1166 Pfam Polyprenyl synthetase 748 992 IPR000092 GO:0008299
Cla07g00987 1166 ProSitePatterns Polyprenyl synthases signature 1. 803 817 IPR033749 -
Cla07g00987 1166 ProSiteProfiles Protein kinase domain profile. 33 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla07g00987 1166 Gene3D Umud Fragment, subunit A 1033 1154 - -
Cla07g00987 1166 Pfam Protein kinase domain 33 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla07g00987 1166 Gene3D Phosphorylase Kinase; domain 1 48 370 - -
Cla07g00987 1166 Pfam Signal peptidase, peptidase S26 1104 1133 IPR019533 GO:0004252|GO:0006465
Cla07g00987 1166 Pfam Signal peptidase, peptidase S26 1035 1093 IPR019533 GO:0004252|GO:0006465
Cla07g00987 1166 CDD S26_SPase_I 1032 1136 IPR019533 GO:0004252|GO:0006465
Cla07g00987 1166 SMART serkin_6 33 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla07g00987 1166 TIGRFAM prenyl_cyano: solanesyl diphosphate synthase 717 1033 - -
Cla07g00987 1166 CDD Trans_IPPS_HT 744 1033 IPR000092 GO:0008299
Cla07g00987 1166 MobiDBLite consensus disorder prediction 429 450 - -
Cla07g00987 1166 Gene3D Farnesyl Diphosphate Synthase 717 1032 IPR008949 -
Cla07g00987 1166 SFLD Isoprenoid Synthase Type I 749 1030 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02387 Cla-Chr1:37517715 Cla07g00987 Cla-Chr7:26083570 4.95E-45 dispersed
Cla02g01320 Cla-Chr2:27349699 Cla07g00987 Cla-Chr7:26083570 1.38E-31 dispersed
Cla07g00987 Cla-Chr7:26083570 Cla09g02179 Cla-Chr9:39428202 0 dispersed
Cla08g01531 Cla-Chr8:28061442 Cla07g00987 Cla-Chr7:26083570 1.52E-06 dispersed
Cla11g00588 Cla-Chr11:6667816 Cla07g00987 Cla-Chr7:26083570 1.83E-30 dispersed
Cla07g00987 Cla-Chr7:26083570 Cla02g01800 Cla-Chr2:33016138 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80690 PF00069 Pkinase 2.80E-64 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00987 - K04371 csv:101213897 932.939