Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g00995 ATGGTGGTTTTGTCCAAACCATCAATCCAACAGTTGTATTCTAATTCCTTCATGAGAAATTCCATGTCATCATCCATGGCTGCTGCTGCTTCTTCCTCTGCAGCATTTTTCTCTGAGGTTCCATTCATAGACCTTTCTGCACCAGATGCTAAACAACTCATTGTCAAAGCTTGTGAAGAGCTTGGATTTTTCAAGGTCGTCAACCATGGCGTCCCCATGGAATTCATTTCTACTCTCGAATCAGAATCCACCAATTTCTTCTCCCTTCCACTCTCTGAAAAACAAAAAGCTGCTCCTCCTTCCCCTTTTGGCTATGGCAACAAGCAAATTGGTCGCAATGGCGACGTCGGTTGGGTCGAATATCTTCTCTTAAACACTCACCTAGAATCCAACTCCGATGGGTTCCTCTCCATTTTTGGCCAAGACCCACAAAAACTCCGCTCTGCTGTGAACAATTACATCTCGGCTGTGAGGAATATGGCGTGTGAAATCCTTGAGTTAATGGCGGAAGGATTGAAGATTCAACAGAGGAATGTATTCAGTAAGCTGGTGATGGATGAAGAGAGTGACTCTGTTTTCAGGGTGAACCATTATCCGCCATGTCCAGAGCTTCAAGCTTTGAAAGAGAGGAACATGATTGGATTTGGAGAACACACAGACCCACAAATCATATCGGTTTTGAGATCCAACAATACTTCTGGACTACAAATTTCTCTTGCTGATGGGAATTGGATTTCTGTTCCTCCTGATCAGAATTCCTTTTTCATCAATGTTGGTGACTCTTTACAGGTGATGACTAATGGAAGATTCAAAAGTGTAAAGCATAGGGTTTTGACAAATAGCTTGAAGTCAAGAATTTCAATGATATACTTTGGTGGGCCACCTTTGAGTGAAAAGATAGCTCCTTTGCCTTCTCTTATGAAAGGAGAAGAAAGAAGTTTGTACAAAGAGTTTACTTGGTTTGAGTATAAAAGATCAGCTTACAACTCCAGGTTGGCAGATAACAGGCTTGTGCACTTTGAAAGAATTGCAGCCTCATAA 1041 41.88 MVVLSKPSIQQLYSNSFMRNSMSSSMAAAASSSAAFFSEVPFIDLSAPDAKQLIVKACEELGFFKVVNHGVPMEFISTLESESTNFFSLPLSEKQKAAPPSPFGYGNKQIGRNGDVGWVEYLLLNTHLESNSDGFLSIFGQDPQKLRSAVNNYISAVRNMACEILELMAEGLKIQQRNVFSKLVMDEESDSVFRVNHYPPCPELQALKERNMIGFGEHTDPQIISVLRSNNTSGLQISLADGNWISVPPDQNSFFINVGDSLQVMTNGRFKSVKHRVLTNSLKSRISMIYFGGPPLSEKIAPLPSLMKGEERSLYKEFTWFEYKRSAYNSRLADNRLVHFERIAAS 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26197965 26199548 + ClCG07G010460.1 Cla07g00995 276983

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g00995 346 SUPERFAMILY Clavaminate synthase-like 35 334 - -
Cla07g00995 346 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 30 343 - -
Cla07g00995 346 Pfam non-haem dioxygenase in morphine synthesis N-terminal 40 131 IPR026992 -
Cla07g00995 346 Pfam 2OG-Fe(II) oxygenase superfamily 190 292 IPR044861 -
Cla07g00995 346 PANTHER GIBBERELLIN 2-OXIDASE 30 343 - -
Cla07g00995 346 PRINTS Isopenicillin N synthase signature 54 71 - -
Cla07g00995 346 PRINTS Isopenicillin N synthase signature 218 239 - -
Cla07g00995 346 PRINTS Isopenicillin N synthase signature 254 280 - -
Cla07g00995 346 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 188 294 IPR005123 -
Cla07g00995 346 Gene3D - 4 334 IPR027443 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g00995 K04125 GA2ox; gibberellin 2beta-dioxygenase [EC:1.14.11.13] - csv:101215820 615.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00995 Cla-Chr7:26197965 Cla10g01109 Cla-Chr10:25414484 5.10E-98 dispersed
Cla07g00995 Cla-Chr7:26197965 Cla03g00645 Cla-Chr3:7710214 1.06E-144 transposed
Cla07g00995 Cla-Chr7:26197965 Cla01g02405 Cla-Chr1:37643496 8.33E-146 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g898 . . . . . . . . Cmo16g00489 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma16g00453 . Car16g00411 Cpe14g00383 . . . . . . . . Cla07g00995 Cam07g1070 Cec07g1142 Cco07g1120 Clacu07g1044 Cmu07g1035 Cre07g1411 . . Chy07g01013 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004421 1 1 2 3 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 1 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla07g00995 Cla_Chr07 FPKM 0.906397 1.414231 1.809459 1.995218 2.602936 0.865758 2.90492 1.747528 2.071482 2.04249