Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g01001 ATGGCCGCGGTTGCTGAGGATTCCAGTGAGGCAGCGGCTGCCAAGAATTTTGATCCTAACATGAATCCCAAATCAGAATTTGATGCTCATAAGCTTGCTGAAATGTTCAGCAATTTGAACCCTTTAGCCAAGGAGTTTTTTCCTTCCTCTTACTCTCATGATCGCCAAGATATTCATTTTTATTATCAAAACAATAATCGATTGTTGGCCAAGAACTTTCAGGTCGCCGATCAACTTTTGCACAGTGATAACAATCGCAGGAGAAGGCCCGACTTTAATAACCAGGGGAGAAGAAGAATGAATAATAATAGATCTGTCAGAGCTCAACAAGAGGAAAGTATAAGGAGGACTGTTTATGTCTCTGATATCGATAAGGATGTCTCTGAAGAGGAGCTTGCCAAGGTATTCAGGGAGTTTTGTGGTTATTTCTTCTCGGTCCTCCCTCTTTCAGTTGAAGATCTTTCGCATTCCTATGCCTATTCTCATTCATGCAAACAAAACATAAGTAAGGTTAATGATTGCCGAATATGTGGCGACCCCCATTCAGTTCTGCGTTTTGCTTTTGTGGAGTTTGCTAATGAGCATAGTGCTAGAGCAGCCATAGGCCTTAGTGGGACGGTGGTAGGGTCTTATCCAGTTAAGGTACTACCTTCAAAGACTGCCATTCTTCCTGTGAATCCTACCTTTCTCCCCAAGTCAAATGATGAATGGGATATGTGTACAAGGACTATCTACTGCACAAATATTGATAAGAAGGTATCTCAGGCTGAAGTTAAGAGTTTCTTTGAAACATCTTGTGGTGAGGTAACTCGCTTGAGGTTGTTGGGTGATCAGTTGCATTCGACCCGTATAGCTTTTGTTGAGTTTGCTCTGGTGAGCTTTTTCTCATTACACGAAATTAATCATATGTTTAAGATACGACTAATTAGTTGCAACAGATTCTATCTAGCTCTTTCTAATTCATGCCGTCGTATCTCACATAGCCAATTTTGCCTTCGTACGGAACAGGCCGAGACTGCTCTTCAAGCTCTTAATTGTAGTGGCATGATCTTGGGTGCTCAACCAATCAGGGTAAGTCCGTCTAAGACGCCTGTTAGGCCACGAGTTACTCGCCCGGGTAGCATTAAGCCATCTTGA 1137 42.48 MAAVAEDSSEAAAAKNFDPNMNPKSEFDAHKLAEMFSNLNPLAKEFFPSSYSHDRQDIHFYYQNNNRLLAKNFQVADQLLHSDNNRRRRPDFNNQGRRRMNNNRSVRAQQEESIRRTVYVSDIDKDVSEEELAKVFREFCGYFFSVLPLSVEDLSHSYAYSHSCKQNISKVNDCRICGDPHSVLRFAFVEFANEHSARAAIGLSGTVVGSYPVKVLPSKTAILPVNPTFLPKSNDEWDMCTRTIYCTNIDKKVSQAEVKSFFETSCGEVTRLRLLGDQLHSTRIAFVEFALVSFFSLHEINHMFKIRLISCNRFYLALSNSCRRISHSQFCLRTEQAETALQALNCSGMILGAQPIRVSPSKTPVRPRVTRPGSIKPS 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26282228 26290481 - ClCG07G010530.2 Cla07g01001 276989

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g01001 378 MobiDBLite consensus disorder prediction 84 110 - -
Cla07g01001 378 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 167 372 - -
Cla07g01001 378 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 141 - -
Cla07g01001 378 SMART rrm1_1 243 312 IPR000504 GO:0003723
Cla07g01001 378 SMART rrm1_1 117 216 IPR000504 GO:0003723
Cla07g01001 378 SUPERFAMILY RNA-binding domain, RBD 169 290 IPR035979 GO:0003676
Cla07g01001 378 Pfam Ataxin-2 C-terminal region 35 50 IPR009818 -
Cla07g01001 378 MobiDBLite consensus disorder prediction 96 110 - -
Cla07g01001 378 Gene3D - 59 216 IPR012677 -
Cla07g01001 378 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 244 290 IPR000504 GO:0003723
Cla07g01001 378 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 168 213 IPR000504 GO:0003723
Cla07g01001 378 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 220 IPR000504 GO:0003723
Cla07g01001 378 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 242 289 IPR000504 GO:0003723
Cla07g01001 378 MobiDBLite consensus disorder prediction 1 22 - -
Cla07g01001 378 Gene3D - 230 368 IPR012677 -
Cla07g01001 378 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 9 167 372 - -
Cla07g01001 378 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 9 1 141 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g01001 - - - csv:101215100 543.502
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g01001 Cla-Chr7:26282228 Cla07g01660 Cla-Chr7:33881438 1.30E-93 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g910 . . . . . . . Bma13g00905 Cmo16g00493 Cmo04g00693 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme07g00770 Blo07g00996 . Bda05g00815 Bda12g00790 . . . . . . . Cma04g00645 Cma16g00458 Car04g00600 Car16g00416 Cpe14g00386 Cpe01g00582 . . . . . . . Cla07g01001 Cam07g1077 Cec07g1149 Cco07g1127 Clacu07g1051 Cmu07g1042 Cre07g1417 . . Chy07g01020 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004204 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla07g01001 Cla_Chr07 FPKM 11.559876 12.67972 27.003572 28.240406 79.780823 83.260002 74.466484 34.537506 34.75597 33.15514