Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g01006 ATGAGCTGCTCCTGCGATAAGGAACGCAAGTTTGCTGATGGTAGGAACAGATTCAGACGAAGTTTGAATCGTGATGTTAACAAACCTGAATTTGTGAAGTGTGGGGTTGGAAAGTTCAGGGAGGGAAAAGAAGGAAAAATAATAACGCTATGCGATTTCGCTGGTGGTGGTGCCGGCGGCGACAGTCGGGGAGTAGAGGTACCGGACCGGCGGCCTCAAATGCTCTGCACAAACTTAGTCAGGAAGAAGAAGGTCGTTAATGGCCTTGCAATTGCAAATGAGTTGGCAACCGAGTTTACTGAGTCAGAAGCGGCGGAACGGCCCCCCACTCGGTCTCAAAAACCTAGGCAATACCTGCTATCTCAACAGCGCGATTCTGCTTCCTCCGACGCCGACCGAAAGCGCGAATGTCCGTTTTGCATTCTGGAGAGGCGGATAGTGAGGTCTTTGAGCTTGGATCTCACCTTGGACTCGCCTTTCAAGATCCAGAACTGTCTCAGGATCTTCGCCGAGCATTTTCGCTTGGGCCGTCAGGAGGACGCCCACGAGTTCCTTCGCTATGTCATCGACGCTTGTCACAACACCTGCCTCCGCTTGAAGAAGCTGCGTCGAAATGGCAGCTACAATGGTGGAGCTACCAGTGGAAGCTCCACGGTCGTGAAGGAAATTTTCGGGGGTGCCTTGCAGAGCCAGGTGAAGTGTTTATCTTGTGGAAACGACTCCAATAAGGTTGACGAGATAATGGATATTAGTCTTGATGTTTTGCATAGTAGTTCTCTTAAAGAGGCATTGCAGAAGTTCTTTCAACTGGAAATTTTAGATGGCAGTAATAAGTACAAGTGTGACAATTGTAAGAAGTTGGTCGTGGCTAGGAAGCAGATGTCAATACTCCAAGCACCAAATATACTTGTCATCCAATTGAAGGTTTGTTCTGACCTTTGGTTCACTGTTTCTTTTCACCGTTCAATTAATCGTTGTTTGTTCAAGTTCCTAGTGTTGCTGCTTTCATGTAAAGGCATTGTTCTTGGATGGGTTTGGCAGAGATTTGAAGGCATATTTGGTGGTAAGATTGACAAGGCCATTGCGTATGAGGAGAGTTTGCAGCTTTCAAATTTCATGTGCAAAGGAAGTCAGTCGAAGCCAACAAAATGGGAGATGGGAGGAATACTAGATTCTGGTAATATCATTTGGACAGCAATCGGGCCTTTAAAGAGCTTATGTGCTTTGGTTGATTTGCGGCCAGAGTACAAGCTCTTTGGTACCATAGTGCATTCAGGCTTCTCTGCAGAATCCGGACATTATTATGCATATATCAAGGATGCATCGGGTAGGTGGTATTGCTGCAATGACTCATTTGTTACAGTTTCAACTCTGCAGGAGGTTTTGTCAGAAAAGGTTTATATTCTCTTTTTCTCTCGTACAAACCAAAGGCCAGTAACTGCCAGCACAGCTCTTGCTTCCAATGGTGTAAAATCCCATGAATGTAATGGCAGTGATGGATCCAAAATCTCAAAACCTTCAGTTGTAACTAAAACAACAACACAGACAAGATCCCATGTTGAGCAATCTTCTCGGAAGGAACTTTCAAATTTGTCTAAGGTAGATAAACCAACTTTCAGCCCACGAGGAAAGTCTAATATGAATGGACATTCTGTTATGAATGGGCATTCTAATTCCATACGAGCTCCTTCCACCATTAACGGAAAGATTGTTCTTGAGAAGGATCAATCCATCAAGGAGAATGGGAAAGAGAATGTTAACTCGTTGCCTCTGGAAAATGGTGCAAGACGTAAATCTTCTGTTGGGAATGGAAATAGCAGGAAAAATTTTGAAGTTGATACTGATGTCACTGAGAGAGGACAAAAATCTGTTTTAATGAATAGTAATGGTAATGGTGGGAGTATGGGAATGAAAGCAGATAAACATGACCTATGTGGCAATAATCCTATGAATAACAAGTTCACTGCAGGAAGAGGGTCTGGTCATGATGAAGTGGATAATTCAGTCAACTGCTCCTCTGAGGTCAAAAGGGCCAAAAGAAAGTCAGACTTCTGTATCTTGTTTCAACAGGATGCTCAATCTCGGCAAAGAGTTGAAGAGCTGAAACAAAAGTATTCTCAAGAGAGAAACTTTATCAGTTTTACGATCATGCGGTTGGTTAGAGGAGGTCTTCAGTTGCATGCGTTCAAGGAAGAGATTATGTTTACAGGAAATGGACAGCACCCCAACTGCACAACTGGTGGGAGAGAAGAAAGTTCAGGAACTCTATTCGATTTTGAAAGTAGAAGGCAAACAGCTGAGACTCAGTTGATGATGTGCGTTAAGGACATCGTGTATGGTTTCCCAAAATCCTAA 2355 43.91 MSCSCDKERKFADGRNRFRRSLNRDVNKPEFVKCGVGKFREGKEGKIITLCDFAGGGAGGDSRGVEVPDRRPQMLCTNLVRKKKVVNGLAIANELATEFTESEAAERPPTRSQKPRQYLLSQQRDSASSDADRKRECPFCILERRIVRSLSLDLTLDSPFKIQNCLRIFAEHFRLGRQEDAHEFLRYVIDACHNTCLRLKKLRRNGSYNGGATSGSSTVVKEIFGGALQSQVKCLSCGNDSNKVDEIMDISLDVLHSSSLKEALQKFFQLEILDGSNKYKCDNCKKLVVARKQMSILQAPNILVIQLKVCSDLWFTVSFHRSINRCLFKFLVLLLSCKGIVLGWVWQRFEGIFGGKIDKAIAYEESLQLSNFMCKGSQSKPTKWEMGGILDSGNIIWTAIGPLKSLCALVDLRPEYKLFGTIVHSGFSAESGHYYAYIKDASGRWYCCNDSFVTVSTLQEVLSEKVYILFFSRTNQRPVTASTALASNGVKSHECNGSDGSKISKPSVVTKTTTQTRSHVEQSSRKELSNLSKVDKPTFSPRGKSNMNGHSVMNGHSNSIRAPSTINGKIVLEKDQSIKENGKENVNSLPLENGARRKSSVGNGNSRKNFEVDTDVTERGQKSVLMNSNGNGGSMGMKADKHDLCGNNPMNNKFTAGRGSGHDEVDNSVNCSSEVKRAKRKSDFCILFQQDAQSRQRVEELKQKYSQERNFISFTIMRLVRGGLQLHAFKEEIMFTGNGQHPNCTTGGREESSGTLFDFESRRQTAETQLMMCVKDIVYGFPKS 784
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26405281 26421009 + ClCG07G010575.1 Cla07g01006 276994

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g01006 784 MobiDBLite consensus disorder prediction 100 131 - -
Cla07g01006 784 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 37 130 604 - -
Cla07g01006 784 MobiDBLite consensus disorder prediction 620 634 - -
Cla07g01006 784 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 416 434 IPR018200 GO:0004843|GO:0006511
Cla07g01006 784 MobiDBLite consensus disorder prediction 490 637 - -
Cla07g01006 784 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 89 474 IPR028889 -
Cla07g01006 784 Pfam Ubiquitin carboxyl-terminal hydrolase 158 471 IPR001394 GO:0004843|GO:0016579
Cla07g01006 784 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 130 604 - -
Cla07g01006 784 SUPERFAMILY Cysteine proteinases 116 473 IPR038765 -
Cla07g01006 784 MobiDBLite consensus disorder prediction 490 519 - -
Cla07g01006 784 Gene3D Cysteine proteinases 110 484 - -
Cla07g01006 784 MobiDBLite consensus disorder prediction 533 565 - -
Cla07g01006 784 MobiDBLite consensus disorder prediction 582 610 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g01006 K11855 USP36_42; ubiquitin carboxyl-terminal hydrolase 36/42 [EC:3.4.19.12] - csv:101218797 890.182
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g01006 Cla-Chr7:26405281 Cla11g01420 Cla-Chr11:27755640 1.58E-35 dispersed
Cla07g01006 Cla-Chr7:26405281 Cla08g01169 Cla-Chr8:24568424 1.54E-36 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g945 . . . . . . . . . Cmo04g00689 . Cma09g00749 . . . . Cpe02g00634 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe03g00860 . . . . Cmo09g00741 . Cma16g00463 Car04g00597 Car16g00419 Cpe14g00389 Cpe01g00579 . . . . . . . Cla07g01006 Cam07g1081 Cec07g1153 Cco07g1131 . Cmu07g1046 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004811 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 1 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla07g01006 Cla_Chr07 FPKM 5.031936 4.680084 2.192625 1.922878 0.670411 0.451604 1.072682 36.41732 38.35828 38.026104