Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g01044 ATGAATAATATTATCAAGTATAATAATCTCCTCACCAATCTTGCTCTATCTTCTCTTCTCCCTCTCCTTGCTTTCCTCTTCATGATCAATCCTACCCCTCCCTTCCTTTCCAATCTCGTCGCCTTTCGTGACTCTGTCGATTGTCGTCACCACCACCATCACCATCATAAAAACGCAACTGACGAACAGGACCAAACAACGATAACTTCCATTTGTGATAACTTCCCGACCACCCTCCTCCCACCAGAAACCACCAACACTTCTGTTTTTTGTGTTGACCGAAACGGTTGTTGCAACTTCACAACGGTTCAAGCAGCAGTTGATGCTGTGCCAAACTTGAGCTTCAAACGAAACCTAATTTGGATCAACGCTGGAATTTACTACGAGAAGGTGATGGTTCCAAAATCTAAACCAAACGTGACATTTCAAGGACAAGGCTATACAACCACCGCCATTGTTTGGAATGACACTGCCAATTCTTCCCATGGCACCTTTTATAGTGGCTCTGTCCAAGTCTTCTCTTCCAATTTTATTGCCAAGAATATAAGCTTCATGAATGTGGCGCCAATTCCAGGGCCGGGCGACATCGGAGCACAGGCGGTGGCGATTAGAATCGGCGGAGACCAGGCGGCATTTTGGAGCTGCGGATTCTTCGGCGCTCAAGACACTCTCCACGACGACCGTGGTCGCCATTACTTCAAAGATTGCTACATCCAAGGCTCCATCGATTTCATCTTCGGAAACGGAAGATCCTTCTACGAGAGTTGCCAGTTGATTTCGATGGCGAATCCGGTCCCGCAAGGATCGAGGTTTGTGAACGGAGCGGTGACGGCGCACGGCAGAGCCTCCGCTGACGAGAACTCTGGATTTGTTTTTGTTAATTGCAGCATCGGCGGGACCGGCAGAGTGTGGCTCGGCCGCGCGTGGCGGCCGTTCTCTCGCGTCGTCTTTGCTAACACCGTCATGACGGATATTATTGCGGCGGAGGGGTGGAATGACTTTAATGACCCTGCAAGGGACCAAACAATCTTCTATGGAGAGTACAACTGCAGTGGAGCAGGAGCCAATATGAGCTCAAGGGCTCCCTTTGTTCAAAGGCTTAATGATACTCAAGTTTCCTCTTTCCTCAACTTATCCTTCATTGATGCTGACCAATGGCTCCAACCCTACTCATTGTTTTAA 1182 48.65 MNNIIKYNNLLTNLALSSLLPLLAFLFMINPTPPFLSNLVAFRDSVDCRHHHHHHHKNATDEQDQTTITSICDNFPTTLLPPETTNTSVFCVDRNGCCNFTTVQAAVDAVPNLSFKRNLIWINAGIYYEKVMVPKSKPNVTFQGQGYTTTAIVWNDTANSSHGTFYSGSVQVFSSNFIAKNISFMNVAPIPGPGDIGAQAVAIRIGGDQAAFWSCGFFGAQDTLHDDRGRHYFKDCYIQGSIDFIFGNGRSFYESCQLISMANPVPQGSRFVNGAVTAHGRASADENSGFVFVNCSIGGTGRVWLGRAWRPFSRVVFANTVMTDIIAAEGWNDFNDPARDQTIFYGEYNCSGAGANMSSRAPFVQRLNDTQVSSFLNLSFIDADQWLQPYSLF 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26925844 26933514 + ClCG07G011000.2 Cla07g01044 277032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g01044 393 Gene3D - 88 392 IPR012334 -
Cla07g01044 393 ProSitePatterns Pectinesterase signature 2. 238 247 IPR033131 -
Cla07g01044 393 Pfam Pectinesterase 92 383 IPR000070 GO:0030599|GO:0042545
Cla07g01044 393 PANTHER PECTINESTERASE 8-RELATED 47 391 - -
Cla07g01044 393 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 47 391 - -
Cla07g01044 393 SUPERFAMILY Pectin lyase-like 88 390 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00840 Cla-Chr7:23283064 Cla07g01044 Cla-Chr7:26925844 9.54E-90 dispersed
Cla07g01044 Cla-Chr7:26925844 Cla09g01759 Cla-Chr9:34955136 8.02E-67 dispersed
Cla09g00449 Cla-Chr9:4265709 Cla07g01044 Cla-Chr7:26925844 1.13E-64 dispersed
Cla10g01100 Cla-Chr10:25248923 Cla07g01044 Cla-Chr7:26925844 3.50E-66 dispersed
Cla11g01109 Cla-Chr11:22535585 Cla07g01044 Cla-Chr7:26925844 8.24E-62 dispersed
Cla07g01044 Cla-Chr7:26925844 Cla08g01478 Cla-Chr8:27653586 4.32E-82 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g01044 - - bhj:120090174 728.783