Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g01061 ATGCATAGCAAATTAACATACTTATACAACATTTGGATAATCAATAATCTAATTCACCAAGAAAGGGACTCCATTTCCACATCTCTGCTGTGCAAGTTACTTTATCTGGGTTACTCCAATCTTCCCCTTTTTTCTCGTTTTTCATGGAGTAACAACCGGCCTTTGTTCCGTGGGATGGGATCCAGTGGAAGTAAATCGTCGAGTAGTTCGCTGCCGGCGGCGGAGACTCTCTCGTGTTCTGGGAGAATCCGGAGGGGGAGATCCAAAAGCCGGAGAGTTTTCCAGTCTGCTTGCCTCGGTACCCCCTCTGGATCGCACCACAGCGACAATGACGATAATGATTCTGAAACTGAGAATAAAAAGAATGCTCATGATTATTCATCTTCAAATCAGACTGCTCAAGCATTAGATCAGATGAAAGTTGAGGGTTACAGAAGGGTTAAAGCTGAGGAATCTGTTGAAATGCCTTGCATATCATCAAACGTTGTGCTTGATGCATGGGATGAAGCAGGTGTTGCTGTTACAACCCCCAGAGCTGGAAGTACCTCTGCTCGGGTATCTTCCCTGCAGTCGTTGAACCCTTCAAGTAACTTCCTTTCTCGCTTTAGTTTCATTCCTGGTAATGTTAGCTTCAGACTAAGTAGAGCAAGCAGTTTAGGATCATCTAGATCTTATCCCGTGTCTTCAACAAATCTCTCAATGTTGAATGATGAAGACGAGCCTAATTTATCAGACAGACCTGCGAGAGGTGTGGGTGGTGAAGATGAAACTCAGCAAGGTAGGGACTTGCTTCCTGCATCACTAGCTAGTGAAACTCATACTCAATGTTATGGAGACAGAGTAGGGCCAGATGGAAACCTTTCCCTTCCTCGAACTCTACCTGAAAATGAAAGCAGTGAGATTAGACAATCTGACAGACGGGCTGGATCTAGGGAACCGGTTGAGCGCAATTTTCGTTTTAGTCGTACTCTTAGTGTTGGAAGACTCCGTGATAGAGTTCTTCGTCGATCTTCGTTATCTGACTTCACATTTTGTCCTCCTCAACAAGAGGGAGATGAGAGAGATGCAAGTCACAGTGGCGATGACCAACATGTATGGACTGCTGAGACAAGGACTTTGGCATCTGAAGATAATGGTATGACCTCGCCAACAACATCAGGTTATCCAGCTTCTAGTCTATCCAGTTCCCTGTTCAGCACTCAAGATTTTGATGTGGAAGCTACTCGACCTAGAGAAGCTAGGTATCACGATTTGCTGGAACATAGGTCAAATTTCCTTGAACGGAGAAGAAGAATACGGTCCCAGGTTCGTGCCCTACAGCGGCTGGGAAGTCGCTTTGAGAACCTATCTGGGCATGAGAGATCGTGTATATTATCCGGTCAACATAGAACCGGTCATTGTACTTGTCGTATCAATAATCGTGACACAAATATAAACGATAACACCAGTGCTAGAGCCAGTATATCAAGAATTGTAATGTTAGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCCGTAGTTTTATCCTCCCGCCCTGCATCTTCTATTGGCTCTCTGCCTGCACCGAACGATGTTGTAGATTCTTTGCCTGTTAAATTTTATTCCAAGTTGCAAAAGCATCAAAGTGAGGAAGCTGCCCAATGCTACATATGCCTGGTTGAGTATGAGGAAGGAGATAGCATGAGAGTGTTGCCTTGCCATCACGAGTTTCACGCAGCATGTGTCGACAAGTGGTTGAAGGAGATCCACAGGGTATGTCCACTCTGTCGAGGGGACATATGCAGCAGATCTGATGCGTTATCAGACGATGTCAAGTTTTTGTTCTATAGTTTGTGGTGCCTTTTTCTAAGAATCAACTTGCTAGAGTGTTGTAATGGGAGTGGATTCAATCAGTTGAGAAAATTGTTTTCACAGAGAAATATATTAGCTTTTCTCTTGCTCTTGTCCAAGGATGTGAATAAGTATCGGAAAGGGATAGATTTGTTTGTTTACTAG 2007 44.05 MHSKLTYLYNIWIINNLIHQERDSISTSLLCKLLYLGYSNLPLFSRFSWSNNRPLFRGMGSSGSKSSSSSLPAAETLSCSGRIRRGRSKSRRVFQSACLGTPSGSHHSDNDDNDSETENKKNAHDYSSSNQTAQALDQMKVEGYRRVKAEESVEMPCISSNVVLDAWDEAGVAVTTPRAGSTSARVSSLQSLNPSSNFLSRFSFIPGNVSFRLSRASSLGSSRSYPVSSTNLSMLNDEDEPNLSDRPARGVGGEDETQQGRDLLPASLASETHTQCYGDRVGPDGNLSLPRTLPENESSEIRQSDRRAGSREPVERNFRFSRTLSVGRLRDRVLRRSSLSDFTFCPPQQEGDERDASHSGDDQHVWTAETRTLASEDNGMTSPTTSGYPASSLSSSLFSTQDFDVEATRPREARYHDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHERSCILSGQHRTGHCTCRINNRDTNINDNTSARASISRIVMLAEALFEVLDEIHQQSVVLSSRPASSIGSLPAPNDVVDSLPVKFYSKLQKHQSEEAAQCYICLVEYEEGDSMRVLPCHHEFHAACVDKWLKEIHRVCPLCRGDICSRSDALSDDVKFLFYSLWCLFLRINLLECCNGSGFNQLRKLFSQRNILAFLLLLSKDVNKYRKGIDLFVY 668
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 27190640 27196797 - ClCG07G011180.2 Cla07g01061 277049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g01061 668 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 514 599 IPR013083 -
Cla07g01061 668 MobiDBLite consensus disorder prediction 342 393 - -
Cla07g01061 668 MobiDBLite consensus disorder prediction 239 256 - -
Cla07g01061 668 MobiDBLite consensus disorder prediction 351 365 - -
Cla07g01061 668 MobiDBLite consensus disorder prediction 275 314 - -
Cla07g01061 668 MobiDBLite consensus disorder prediction 219 238 - -
Cla07g01061 668 MobiDBLite consensus disorder prediction 298 314 - -
Cla07g01061 668 MobiDBLite consensus disorder prediction 219 260 - -
Cla07g01061 668 MobiDBLite consensus disorder prediction 107 123 - -
Cla07g01061 668 ProSiteProfiles Zinc finger RING-type profile. 552 594 IPR001841 -
Cla07g01061 668 MobiDBLite consensus disorder prediction 366 393 - -
Cla07g01061 668 SMART ring_2 552 593 IPR001841 -
Cla07g01061 668 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 59 601 - -
Cla07g01061 668 SUPERFAMILY RING/U-box 530 600 - -
Cla07g01061 668 CDD RING-H2_PA-TM-RING 551 594 - -
Cla07g01061 668 MobiDBLite consensus disorder prediction 98 137 - -
Cla07g01061 668 Pfam Ring finger domain 551 594 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01190 Cla-Chr6:25113307 Cla07g01061 Cla-Chr7:27190640 4.42E-37 dispersed
Cla07g01061 Cla-Chr7:27190640 Cla10g00333 Cla-Chr10:4344080 2.13E-13 dispersed
Cla11g00772 Cla-Chr11:11097556 Cla07g01061 Cla-Chr7:27190640 7.34E-12 dispersed
Cla07g01061 Cla-Chr7:27190640 Cla11g01406 Cla-Chr11:27613808 1.32E-12 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g01061 - - csv:101213468 926.006