Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g01062 ATGATCACCGTCAATCAGTTTCTCCCATTCATCACGCATCGGTGCCGTCCATTTTCATCTCTCCCAATCACGACCATCCACGACGTTGGAGACGAAGCGCGTAGGGCCCACAACGACAAGATTCGTCATTCCATTTCCTGTCAGCTGTTTTCCGGGTCGGATTTCTTGTTTGTTGTTGTCTTAGTCCACTTGGGTTGCTTGTTAATTAAGCAAACAAGGAAGAAGATGGCCAGTGAAAACTTTGGGTTATGGCTATTTTTTATTGCTTCTCTACAGTTTTTCCTTCAAGCACAGTGTATTAATGTGGGGATTACTTATGTTCAAGATGCTGGTATCAAAGGAGCTGTTTGTTTGGATGGAAGTCCTCCAGCTTATCACTTCAGCGACGGATTTGGCTCGGGAGTCGATAATTGGTTGATACAACTCGAGGGAGGAGGATGGTGCAACAATGTCACAAGTTGCCTCCAACGCAGGGACACTCGTTTAGGATCGTCTAAGAAAATGGTTACCGAGCTTGCGTTCTCAGGAATTTTGAGCAATAAACAGAAATTCAATCCAGATTTCTATAACTGGAACAGAATCAAGGTTCGGTACTGTGATGGATCTTCTTTTACCGGAGACGTTGAAGCCGTTGATCCCGCTACCAATCTGCATTTCAGAGGAGCAAGAGTTTTTCGTGCTATCATCAATAACCTACTTGCCAAGGGAATGAAGAATGCAAAAAACGCTATTCTCTCGGGTTGTTCGGCGGGTGGATTGAGTTCCATTTTACATTGTGATAACTTCAAATCTCTACTTCCTCCTACTACTAAAGTGAAGTGCCTCTCAGATGCAGGATACTTTATCAACGCGAAAGATGTCTCTGGAGCGCAGCACATTGAAGACTTCTACAGCGACGTAGTTGCTACCCATGGTTCTGCAAAGAATTTGCCTATATCATGCACATCAAAAATGAAACCTGAGATGTGTTTCTTTCCTCAAAATGTGGTTCAGCTCATTCAGACTCCAATATTTCTTGTAAATGCAGCCTATGATTCATGGCAGATAAAGAATATACTGGCACCTGGTGTTGCTGATCCACACGGTACTTGGCATGACTGCAAGCTTGACATCAAAAACTGCTCGCCCATTCAGATTCGAATCATGCAAGATTTCAGGGTTCAGTTTTTGAGTGCATTGAATGGCGTTGGAAGTTCTTTATCAAGAGGGCTGTTCATAGATTCTTGCTATGCCCATTGCCAAACTGAAATGCAGGAGACATGGTTACGAGCGGATTCTCCCATGCTGAGTAAGACGGACTTGCGACATCTTTGCAAGAGCACGCTGGTTCATTTGTTTCCATGGAAGCTTAGACGCCCAGTAGGTTTTGCTAGAATGGATTGGGCATTCGTCCACAAAGCTTGGGACAGATGGGCTTCCGCCAGCATTGGCACCTTCGGCCAGCCATTGAAAGCTGCTCTGTTGATTAATTATGATCCAACTGGACCTTCCCGCTTGCTTTCAACCATTGCAGAACAAGAAGGAATATTGCTTAATCCCATAGAGCTGAATCAGTTTGTCGATTTCATCAAACGGGACAAACCCCAAAATGAGAGTTTCAGCATTGGCTCAAATCAATACATAATGACATCAGTCCATGAGAATTGGTTTTGTGCAAGGTGCATGAACACTATAAAGCATGCTGGTGAGGGTGTTGTTATAGTGCAAACAACAGCATTTATGTTGGTTGCTATGTATGATGGTTCAATTGCAGCAGCATCTCGCGCTATGGCAGCTGCGGATCAGTTATCTTGGCAATTAGGCAGGAAAAATCTTTAG 1818 44.0 MITVNQFLPFITHRCRPFSSLPITTIHDVGDEARRAHNDKIRHSISCQLFSGSDFLFVVVLVHLGCLLIKQTRKKMASENFGLWLFFIASLQFFLQAQCINVGITYVQDAGIKGAVCLDGSPPAYHFSDGFGSGVDNWLIQLEGGGWCNNVTSCLQRRDTRLGSSKKMVTELAFSGILSNKQKFNPDFYNWNRIKVRYCDGSSFTGDVEAVDPATNLHFRGARVFRAIINNLLAKGMKNAKNAILSGCSAGGLSSILHCDNFKSLLPPTTKVKCLSDAGYFINAKDVSGAQHIEDFYSDVVATHGSAKNLPISCTSKMKPEMCFFPQNVVQLIQTPIFLVNAAYDSWQIKNILAPGVADPHGTWHDCKLDIKNCSPIQIRIMQDFRVQFLSALNGVGSSLSRGLFIDSCYAHCQTEMQETWLRADSPMLSKTDLRHLCKSTLVHLFPWKLRRPVGFARMDWAFVHKAWDRWASASIGTFGQPLKAALLINYDPTGPSRLLSTIAEQEGILLNPIELNQFVDFIKRDKPQNESFSIGSNQYIMTSVHENWFCARCMNTIKHAGEGVVIVQTTAFMLVAMYDGSIAAASRAMAAADQLSWQLGRKNL 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 27204098 27219121 - ClCG07G011190.2 Cla07g01062 277050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g01062 605 Pfam Pectinacetylesterase 96 436 IPR004963 GO:0016787
Cla07g01062 605 Pfam Profilin 501 600 IPR005455 GO:0003779
Cla07g01062 605 SUPERFAMILY Profilin (actin-binding protein) 468 596 IPR036140 -
Cla07g01062 605 Gene3D Dynein light chain 2a, cytoplasmic 467 604 - -
Cla07g01062 605 PANTHER PECTIN ACETYLESTERASE 82 432 - -
Cla07g01062 605 PANTHER NOTUM-RELATED 82 432 IPR004963 GO:0016787
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00808 Cla-Chr4:23130044 Cla07g01062 Cla-Chr7:27204098 6.17E-22 dispersed
Cla05g00888 Cla-Chr5:8744604 Cla07g01062 Cla-Chr7:27204098 1.15E-115 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g01062 K19882 - csv:101214431 709.523