Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g01072 ATGGGGCAGTCGGTCACACGCTTGAAAACATCCCTCTTCGCACGTGCCACAGCGCCTCTTCAGTCTCACTCCAACGCCTCTCTGTCGAATATTCCACATGCTCTCAGACTCTCGCCCTCACTCTCTCTCTCTCTCTCTAGAAGCAAGCTCCAAACTCAGCCTCTCGGTGAGATAGATTTTGCCAAACCTCTCACGGACCGACCATTTTCTTTCTCTCTTCCACCTCTCTCTTTTACTCACCTGCATTTCTCTCCAATTGGATCTAAGATCGTATTGCAGCTTGGCTTCAACCAAAGTGCCACATGTCCAAGGAAACCTTTGGTCAGCTTGTTCTGTCAGATGATTTGTCGTAGACACCTCACCCTTGACCAGAGCCACCATGGGCATCTCACTGGCCTCACCCCTGATGGTGCGGCACTTCTAAGCTTTAGGATGGCAGTTGCCAGTTCTGATGGAGTCATCTTCCAGTGGAGACCTGAGGATCCAAACCCTTGTAACTGGACAGGAGTGGTCTGCGATCCAAAAACGAAGAGAGTAATCTCATTGAAGCTTGCAAGTCACAAACTGAGTGGGTTCATTGCACCTGAACTTGGGAAGCTAGACCAATTGAAGACCCTGACTCTTTCGGACAACAACCTATATGGAACAATACCATCAGAACTGGGAAATTGCTCGCAGTTGCAGGGAATGTTCTTGCAAAGAAACTACCTAAGTGGAGCGATTCCCTATGAGCTGGGAAACCTTTCAGAGTTGGAAATGTTAGACGTTTCTAGCAACTCCCTTAGTGGAAATATCCCAACGTCCCTTGGGAATTTGGATAAGCTGGCTATTCTCAATGTTTCATCAAATTTTTTAATTGGACCAGTACCTTCTGATGGTGTTCTTTCCAAGTTTTCAGAGACTTCCTTCGTTGGAAATCGTGGTTTGTGTGGGAAACAAGTTAGCGTCATCTGCAAAGACGATAATACTGGATCTGGAACAAATCCTGAGTACCCAAGCTCAGCCCAAAATCAAATGAGGAGGAAGTATTCTGGCCGGCTGCTCATAAGTGCATCAGCAACAGTGGGTGCACTACTACTTGTTGCTCTTATGTGTTTCTGGGGTTGCTTTCTTTACAAAAGATTTGGCAAAAATGACAAGAAAGGTCTTGTGAAGGATGTTGGTGGAGGCGCATCCGTTGTGATGTTTCATGGAGACTTGCCATACTCTTCAAAAGACATCATGAAGAAGTTGGAAACCTTGAATGAGGAACACATAATTGGTTCTGGGGGTTTTGGAACAGTTTACAGGCTTGCAATGGATGATGGCAATGTATTTGCTTTGAAAAATATTGTAAAGATAAATGAGGGGTTTGATCACTTTTTTGAGAGGGAACTTGAAATTCTTGGAAGTTTGAAGCATCGGTACCTTGTTAATTTGAGAGGATATTGCAACTCTCCCACATCAAAACTGTTGATTTATGATTATCTATCTGGGGGAAGCCTTGACGAGGCCCTTCATGAAAGATCTGAGCAATTGGATTGGGACACACGCTTGAATATTATATTGGGAGCAGCAAAAGGGCTTGCTTATTTGCACCATGATTGTTCACCCAGAATCATACATCGGGATATCAAGTCAAGCAACATTTTGCTCGATGGCAATCTGGATGCTCGAGTTTCTGACTTTGGACTTGCCAAGCTTCTGGATGACGATAAATCTCATATTACAACCATTGTTGCTGGAACATTTGGTTATTTGGCCCCCGAATATATGCAAAGTGGTAGGGCAACTGAAAAGACCGATGTATATAGTTTTGGAGTTCTGGTACTTGAAGTACTGAGTGGAAAACGACCTACGGATGCATCATTTATTGAGAAAGGCCTGAACATTGTTGGCTGGTTAAATTTTCTTGTCACGGAGAATAGGCAACGAGAAATAGTTGATCCACAATGTGAAGGAGTGCAGTCGGAAACTCTTGATGCATTGCTAAGGCTTGCTATTCAGTGTGTTTCTTCTAGTCCAGATGATCGACCGACTATGCACCGAGTAGTCCAGTTCTTTGAATCCGAGGCATGGAGAATCGTCTCGTTCAGGCATGGAGAATCGTCCCTCGATTTCACTTATTTTCTGCCTGCGATTCATTAA 2127 44.38 MGQSVTRLKTSLFARATAPLQSHSNASLSNIPHALRLSPSLSLSLSRSKLQTQPLGEIDFAKPLTDRPFSFSLPPLSFTHLHFSPIGSKIVLQLGFNQSATCPRKPLVSLFCQMICRRHLTLDQSHHGHLTGLTPDGAALLSFRMAVASSDGVIFQWRPEDPNPCNWTGVVCDPKTKRVISLKLASHKLSGFIAPELGKLDQLKTLTLSDNNLYGTIPSELGNCSQLQGMFLQRNYLSGAIPYELGNLSELEMLDVSSNSLSGNIPTSLGNLDKLAILNVSSNFLIGPVPSDGVLSKFSETSFVGNRGLCGKQVSVICKDDNTGSGTNPEYPSSAQNQMRRKYSGRLLISASATVGALLLVALMCFWGCFLYKRFGKNDKKGLVKDVGGGASVVMFHGDLPYSSKDIMKKLETLNEEHIIGSGGFGTVYRLAMDDGNVFALKNIVKINEGFDHFFERELEILGSLKHRYLVNLRGYCNSPTSKLLIYDYLSGGSLDEALHERSEQLDWDTRLNIILGAAKGLAYLHHDCSPRIIHRDIKSSNILLDGNLDARVSDFGLAKLLDDDKSHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVLSGKRPTDASFIEKGLNIVGWLNFLVTENRQREIVDPQCEGVQSETLDALLRLAIQCVSSSPDDRPTMHRVVQFFESEAWRIVSFRHGESSLDFTYFLPAIH 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 27323834 27336899 + ClCG07G011290.2 Cla07g01072 277060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g01072 708 SMART serkin_6 414 681 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla07g01072 708 PANTHER RECEPTOR-LIKE PROTEIN 55 136 685 - -
Cla07g01072 708 Gene3D Transferase(Phosphotransferase) domain 1 490 690 - -
Cla07g01072 708 SUPERFAMILY Protein kinase-like (PK-like) 398 681 IPR011009 -
Cla07g01072 708 Pfam Leucine rich repeat 202 261 IPR001611 GO:0005515
Cla07g01072 708 Gene3D Phosphorylase Kinase; domain 1 390 489 - -
Cla07g01072 708 ProSitePatterns Protein kinases ATP-binding region signature. 420 442 IPR017441 GO:0005524
Cla07g01072 708 Gene3D Ribonuclease Inhibitor 134 320 IPR032675 -
Cla07g01072 708 Pfam Protein kinase domain 416 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla07g01072 708 Pfam Leucine rich repeat N-terminal domain 135 173 IPR013210 -
Cla07g01072 708 SUPERFAMILY L domain-like 135 295 - -
Cla07g01072 708 ProSitePatterns Serine/Threonine protein kinases active-site signature. 533 545 IPR008271 GO:0004672|GO:0006468
Cla07g01072 708 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FEI 1 136 685 IPR031071 GO:0004672|GO:0005524|GO:0030244
Cla07g01072 708 ProSiteProfiles Protein kinase domain profile. 414 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00765 Cla-Chr7:21437950 Cla07g01072 Cla-Chr7:27323834 1.21E-57 dispersed
Cla07g01072 Cla-Chr7:27323834 Cla11g01583 Cla-Chr11:29526364 0 dispersed
Cla11g01673 Cla-Chr11:30348052 Cla07g01072 Cla-Chr7:27323834 9.94E-93 dispersed
Cla07g01072 Cla-Chr7:27323834 Cla01g01420 Cla-Chr1:28700111 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80694 PF00069 Pkinase 3.70E-47 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g01072 - - csv:101205992 1074.31