Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g01078 ATGCCGGGTTTGGTCTCCGTCAAAACCCCGCCGGACGCCCCGCCCCTTCGGATCTCTGTCCCCGATACACCTCCGGCCACTAATCACCGGCCCCCATCTCCTCTAACGAAGAAACAACCCTCTCCTTCTCCTTCCCGATCCAAGCCCTCCCCCAACGGGAAGAAGAAGCTTCAACCGGATAGTCCCACCGCCGCCCTATTTCCACCGGATTCTTCTCTTGACAACCCCGATCTTGGGCCTTTTCTTCTCAAGCTCGCTCGCGATACCATCGCCTCCGGCGACGGCCCCAACAAAGCCCTAGATTACGCGATCCGAGCATCGAAGTCGTTCGAGCGATGCGCCGTGGACGGTGAACCGAGCTTGGACTTGGCCATGAGCCTTCATGTTCTCGCTGCCATTTATTGCAGCTTGGGCCGGTTCGAGGAGGCGGTGCCGGTTCTTGAACAAGCGATTCAAGTTCCTGACATTGGAAGAGGACCGGATCATGCCCTTGCTGCTTTTTCCGGCCATATGCAACTGGGTGATACATATTCGATGCTGGGTCAGATCGAGCGCTCGATTGGTTGCTATGAAGAGGGCTTGAAGATTCAGATCGAGGCCTTGGGAGAGACGGATCCCAGAGTTGGGGAGACTTGCAGGTATTTATCTGAGGCGCACGTTCAAGCAATGCAGTTTGATAGAGCGGAACAATTGTGCAAGAAAACTCTTGAGATTCACCATGCACATAGTGAGCCTGCCTCACTTGAAGAAGCAGCTGACCGTCGACTGATGGCGCTCATTTGTGAGGCAAAATGTGATTATGAATCGGCACTTGAGCACCTTGTCCTAGCTAGTATGGCGATGATCGCTAATGGGCAAGACAGTGAGGTTGCTGCCATTGATGTGAGCATTGGAAATATTTACATGTCTCTATGTCGTTTTGACGAGGCAGTTTTCTCGTACCAAAAGGCTCTCACTGTATTCAAAGCATCTAAGGGTGACAACCATCCTTTGGTCGCCTCTGTTTTCATACGCCTTGCTGACTTGTATCACCGGACTGGAAAGCTCCGGGAGTCCAAATCTTATTGTGAAAATGCAATGAGGATATACTCGAAACCTGTGCCTGGAACTTCACCCGAAGAAATAGCTGGTGGGTTGACAGAAATTTCAGCAATTTATGAGTCTGTTGACGAGCCCGAGGAGGCTTTGAAGCTCTTGCAGAAGGCCATGAAGATGTTGGAGGATAAACCTGGACAGCAAAGCACGATTGCTGGGATAGAAGCACGGATGGGAGTGATGTTTTACATGGTTGGAAGGTACGAAGATGCAAGGAATGCTTTTGAGAGTGCGATATCGAAACTCAGAGCCACTGGGGAGAGAAAATCTGCATTCTTTGGTGTTGTGTTGAATCAAATGGGCTTGGCCTGTGTGCAGTTGTTCAAGATAGATGAAGCTGCTGAGTTGTTTGAAGAAGCAAGAGGAATCTTGGAGCAAGAGTGTGGCAATTGTCATCAAGATACCATTGGAGTATATAGCAACCTTGCTGCAACCTATGATGCTATGGGAAGAGTCGACGATGCTATCGAAATATTGGAATCTGTTCTTAAGTTGAGAGAAGAGAAGCTTGGAATTGCGAATCCAGATTTTGAGGATGAAAAGAGGAGACTGGCTGAGCTACTGAAGGAAGCAGGGCGAACCCGAAACCGGAAAGCAAAGTCTCTGGAAAACCTTATTGACCCGAACTCGAGGAAGACAAAGAAAGAGGCAACAAAGAAGTGGTCGGGCTTGGGATTTAGAATTTGA 1782 49.66 MPGLVSVKTPPDAPPLRISVPDTPPATNHRPPSPLTKKQPSPSPSRSKPSPNGKKKLQPDSPTAALFPPDSSLDNPDLGPFLLKLARDTIASGDGPNKALDYAIRASKSFERCAVDGEPSLDLAMSLHVLAAIYCSLGRFEEAVPVLEQAIQVPDIGRGPDHALAAFSGHMQLGDTYSMLGQIERSIGCYEEGLKIQIEALGETDPRVGETCRYLSEAHVQAMQFDRAEQLCKKTLEIHHAHSEPASLEEAADRRLMALICEAKCDYESALEHLVLASMAMIANGQDSEVAAIDVSIGNIYMSLCRFDEAVFSYQKALTVFKASKGDNHPLVASVFIRLADLYHRTGKLRESKSYCENAMRIYSKPVPGTSPEEIAGGLTEISAIYESVDEPEEALKLLQKAMKMLEDKPGQQSTIAGIEARMGVMFYMVGRYEDARNAFESAISKLRATGERKSAFFGVVLNQMGLACVQLFKIDEAAELFEEARGILEQECGNCHQDTIGVYSNLAATYDAMGRVDDAIEILESVLKLREEKLGIANPDFEDEKRRLAELLKEAGRTRNRKAKSLENLIDPNSRKTKKEATKKWSGLGFRI 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 27382234 27385841 + ClCG07G011350.1 Cla07g01078 277066

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g01078 593 PANTHER - 1 592 - -
Cla07g01078 593 MobiDBLite consensus disorder prediction 564 583 - -
Cla07g01078 593 Pfam MalT-like TPR region 128 272 IPR041617 -
Cla07g01078 593 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 1 592 - -
Cla07g01078 593 SMART tpr_5 501 534 IPR019734 GO:0005515
Cla07g01078 593 SMART tpr_5 291 324 IPR019734 GO:0005515
Cla07g01078 593 SMART tpr_5 124 157 IPR019734 GO:0005515
Cla07g01078 593 SMART tpr_5 209 242 IPR019734 GO:0005515
Cla07g01078 593 SMART tpr_5 459 492 IPR019734 GO:0005515
Cla07g01078 593 SMART tpr_5 417 450 IPR019734 GO:0005515
Cla07g01078 593 SMART tpr_5 376 409 IPR019734 GO:0005515
Cla07g01078 593 SMART tpr_5 333 366 IPR019734 GO:0005515
Cla07g01078 593 SMART tpr_5 167 200 IPR019734 GO:0005515
Cla07g01078 593 SUPERFAMILY TPR-like 127 537 IPR011990 GO:0005515
Cla07g01078 593 Pfam Tetratricopeptide repeat 461 533 - -
Cla07g01078 593 Pfam Tetratricopeptide repeat 290 364 - -
Cla07g01078 593 Gene3D Tetratricopeptide repeat domain 279 456 IPR011990 GO:0005515
Cla07g01078 593 Gene3D Tetratricopeptide repeat domain 82 278 IPR011990 GO:0005515
Cla07g01078 593 Gene3D Tetratricopeptide repeat domain 457 578 IPR011990 GO:0005515
Cla07g01078 593 ProSiteProfiles TPR repeat profile. 501 534 IPR019734 GO:0005515
Cla07g01078 593 Coils Coil 389 409 - -
Cla07g01078 593 MobiDBLite consensus disorder prediction 1 73 - -
Cla07g01078 593 ProSiteProfiles TPR repeat profile. 291 324 IPR019734 GO:0005515
Cla07g01078 593 Coils Coil 542 562 - -
Cla07g01078 593 MobiDBLite consensus disorder prediction 14 47 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g01078 - - - csv:101207194 1137.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00246 Cla-Chr6:3041111 Cla07g01078 Cla-Chr7:27382234 0 dispersed
Cla07g01078 Cla-Chr7:27382234 Cla09g00717 Cla-Chr9:7044595 3.10E-51 dispersed
Cla07g01078 Cla-Chr7:27382234 Cla06g01660 Cla-Chr6:30114025 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g193 . Blo03g00263 . Bda08g00450 Bpe05g00710 . . . . Cmo16g00575 . . . . . Cpe14g00445 . . . . . . . . Cla07g01078 Cam07g1422 Cec07g1234 Cco07g1213 Clacu07g1138 Cmu07g1121 Cre07g1498 . . . . . . . Cme07g01520 . . . . . . Bma05g00892 Bma12g00623 . . . . Cma16g00526 . . . . . . . . . . . . . . . . . . . Csa04g00686 Chy07g01123 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001869 2 3 3 3 2 2 3 2 2 2 2 2 2 2 2 3 2 2 3 2 3 2 2 2 2 2 2 3 2 2 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla07g01078 Cla_Chr07 FPKM 9.368677 10.908061 2.55501 3.039317 9.187029 11.796629 10.77793 4.123371 3.128227 3.085971