Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g01080 ATGACCGAGCCGGATTCCGATCACCCATCTCCCCTTTTCCCCAAATCAACTCACCGTTCCACTTCCGACGACCGGACCCCACTTATGGATTTCGATCTCGACTTGGACATTCCTTGGCCTTTGGATCAAATCCCTTCTTTCGCTTCCAATCCCATGTCCCCTTTTCTTCTTTCCACCTCCGATCATCTTGCTTCCCCTCTTTGGGGCTTCTCTGAAGCTGATGACGATGACGATTCCAAGTTTGCTGCCTATGCTTGCTCTAGATTGGGTATGAACAAATTGAAAGGTAGGAACATAGACTACTATGAGATTGAAAACACTTTAGGCTTTACTTTTGAAATATGTTTGCTTATGGATATGATTCTCTATGGGGTTTCTGGGTGTACTTCCAATTCACATTCCGTACCGCAAAAGCCGACCGAGAACCAAAAGTTTAAGATTCTTCCAGTTCCATCTTCATCATGGGGACTACTGCCATCGGAGAATCCTGATGGGTATTGCTTAATCAAAGAAAAAATGGCACAAGCTCTTCGGTACATTAAAGAATCATCTGACCAGCATGTTCTAGCTCAGGTTTGGGCGCCTGTAAAAAGTGGTGGCAAGTTTGTACTTTCAACTTCTGGGCAACCATTCGTCCTTGATTCGCAGAGCAATGGACTTCATCAGTATCGGATGGCCTCTTTGACGTTTATGTTTTCCTTGGACCCTGACCAGGACGGATATCTTGGGCTTCCTGGTCGTGTTTTCCAACAAAAATTGCCTGAATGGACTCCAAATGTGCAGTATTACTCAAGCAAGGAGTATCCGCGACTTAGTCATGCTCTTAACTACAATGTTCAGGGAACTTTGGCTTTGCCTGTTTTCGACCCTTCCGGGCACTCTTGTCTTGGTGTTCTAGAGCTAATCATGACCTCACCGAAGATCAATTATGCACCTGAGGTGGACAAAGTCTGCAAAGCTCTCGAGGCTGTCAATCTAAAAAGTTCAGAAATTTTGGATCATCCGAATAATCAGATACAATCTTGGCAATGCTTTTCAAACCAGATTTGCAATGAAGGTCGTCAGAATGCATTGGCCGAAATTTTGGAGGTACTCACAGTTGTATGCGAAACTCATAACTTACCATTGGCTCAAACCTGGGTTCCATGCAGGCACCGAAACGTGCTCGCCTACGGTGGAGGTTTGAAGAAAAACTGTACTAGCTTTGATGGTAGTTGCATGGGACGGATCTGTATGTCTGCGACTGAAGTAGCATCGTATGTTGTCGATGCTCACATGTGGGGTTTTCGTGACGCATGTTTAGAACACCATTTACAAAAGGGTCAAGGGGTTTCTGGGAGAGCGTTTTTATCCCACAGCTCATGTTTTTGTGGAGACATCACCCAATTCTGTAAGACTGAGTACCCTTTGGTACACTATGCACTTATGTTTGGATTGAAGAGCTGTTTTTCAATCTGCTTACGAAGCACGTTTACTGGAGATGATGAGTACATTCTAGAATTTTTTCTGCCACCGAGCATTGTTGATTATCAGGAACAAAAGACTTTGTTGGGTGCATTAATGGCAACAATGAAGAAGCATTTCTACACTCTCAAAGTTGCATCTGGAATCAACCTTGAGGACAAGGAAGGACTTGTCGAGATCATTCAAGCATCGAGAAATGGAGGATTTGAATCGAGACTTGAATATATTCAAATTCCGCGACCCATGGAATTGGCACCTGTATCTGATGACATACCAAAAGCAGTGGAGGTAGTTGCACTAGAAACATTGCAACAACAATCTTTAATGGTTCATGATGCCCCGAAGGATGAAAACAATAGTGCTCGGGATGGGGAAAGCCACAACCCCATTCCTTGTCCACAGAATAAGGAAGTAAAAAAGACGTCTGAAAGGAAGCGTGGAAAGGCAGAGAAATCAATTAGTCTGGAGGTTCTTCAACAATATTTTGCTGGCAGTCTTAAGGATGCTGCCAAAAGCCTTGGCGTTTGTCCCACAACAATGAAGCGTATCTGTAGGCAACACGGGATCTCACGGTGGCCCTCTCGGAAGATCAACAAGGTCAATCGCTCACTTTCAAAGCTGAAGCGCGTGATTGAATCTGTTCAAGGGGCTGAAGGAGCATTTGGAATATCTTCTCTGGCTACAAGTCCACTTCCTGTTACAGTTAGCTCAAGTTCTCATCCTTTAACTCCCGAAGGGTCTAATCAGCAAAACTTTGTTGCTTCTCAACCATCTGATTCTCAATATAAGGAAACAAACACCTCAGAAGCACAGACAAATGACACACAGGCTAGATTGGAAGATCAATTGCATAGAGTGTTGAGTCCAGAGGAACCAATTCACGAACAGAATGGATATCTGCCGAAGTTTGGAAATGGTTTGAACAATTTTAGAACAGGGAGTGGATCACGGGAAGAGAGTGCCGGGACACCTACTTCTCATGGTTCATGCCAAGGTAGTCCTGCAAACGATAGTGCACTAGCAAATAATCCCATTTCTATTCCTCAGCATGAACAATGTGTAAGAAGAGAATCTCCTGAAGTAGCATTCCATTCAATCGATAAACTGAATATATCCGCACCTGCTTGTCCAATCTCGGATGCGATCGTGATGGTTGAGCCTGAGGAACCATTTGGAGGAATGCTGATTGAGGATGCAGGAAGTTCGAAGGACTTGAAAAATCTTTGTGCTTCTGTCACTGATGCGGTTCTTGACGAGCAAGTACCTGAATTTTGTTGGTCCAACCCTCCTGATATGGCTCTGAGACAACCTATGGACTCTATTTGTCACACAGTTCCCCATATATCACTAAGGCAAGAACCAAGGAGGATGACTATCAAGGCCACTTATAAGGAAGATATTATTCGATTTCGAATTCCTTTGAGTTCTGGTATTGTGGAGTTGAGAGAAGAAGTGGCAAAGAGATTGAAATTGGAGGTTGGTACGTTCGATATCAAATACATGGACGACGATCGTGAATGGGTTCTTATTGCGTGCGATGCAGACCTACAAGAGTGTGTAGATATTTCAAAGTCGTCAGGTAGCAATATAATAAGATTGTCGGTTCATGATTTAAATGTCCATCTTGGGAGTTCTTGTGAGAGTACTGGGGAGTGA 3120 43.85 MTEPDSDHPSPLFPKSTHRSTSDDRTPLMDFDLDLDIPWPLDQIPSFASNPMSPFLLSTSDHLASPLWGFSEADDDDDSKFAAYACSRLGMNKLKGRNIDYYEIENTLGFTFEICLLMDMILYGVSGCTSNSHSVPQKPTENQKFKILPVPSSSWGLLPSENPDGYCLIKEKMAQALRYIKESSDQHVLAQVWAPVKSGGKFVLSTSGQPFVLDSQSNGLHQYRMASLTFMFSLDPDQDGYLGLPGRVFQQKLPEWTPNVQYYSSKEYPRLSHALNYNVQGTLALPVFDPSGHSCLGVLELIMTSPKINYAPEVDKVCKALEAVNLKSSEILDHPNNQIQSWQCFSNQICNEGRQNALAEILEVLTVVCETHNLPLAQTWVPCRHRNVLAYGGGLKKNCTSFDGSCMGRICMSATEVASYVVDAHMWGFRDACLEHHLQKGQGVSGRAFLSHSSCFCGDITQFCKTEYPLVHYALMFGLKSCFSICLRSTFTGDDEYILEFFLPPSIVDYQEQKTLLGALMATMKKHFYTLKVASGINLEDKEGLVEIIQASRNGGFESRLEYIQIPRPMELAPVSDDIPKAVEVVALETLQQQSLMVHDAPKDENNSARDGESHNPIPCPQNKEVKKTSERKRGKAEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFGISSLATSPLPVTVSSSSHPLTPEGSNQQNFVASQPSDSQYKETNTSEAQTNDTQARLEDQLHRVLSPEEPIHEQNGYLPKFGNGLNNFRTGSGSREESAGTPTSHGSCQGSPANDSALANNPISIPQHEQCVRRESPEVAFHSIDKLNISAPACPISDAIVMVEPEEPFGGMLIEDAGSSKDLKNLCASVTDAVLDEQVPEFCWSNPPDMALRQPMDSICHTVPHISLRQEPRRMTIKATYKEDIIRFRIPLSSGIVELREEVAKRLKLEVGTFDIKYMDDDREWVLIACDADLQECVDISKSSGSNIIRLSVHDLNVHLGSSCESTGE 1039
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 27410322 27414757 - ClCG07G011370.1 Cla07g01080 277068

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g01080 1039 MobiDBLite consensus disorder prediction 1 25 - -
Cla07g01080 1039 Pfam RWP-RK domain 640 688 IPR003035 -
Cla07g01080 1039 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 130 1037 - -
Cla07g01080 1039 MobiDBLite consensus disorder prediction 779 831 - -
Cla07g01080 1039 MobiDBLite consensus disorder prediction 721 763 - -
Cla07g01080 1039 SMART PB1_new 944 1026 IPR000270 GO:0005515
Cla07g01080 1039 PANTHER PROTEIN NLP8 130 1037 IPR045012 GO:0003700
Cla07g01080 1039 SUPERFAMILY CAD & PB1 domains 938 1027 - -
Cla07g01080 1039 CDD PB1_NLP 945 1025 IPR034891 -
Cla07g01080 1039 Pfam PB1 domain 945 1025 IPR000270 GO:0005515
Cla07g01080 1039 MobiDBLite consensus disorder prediction 795 831 - -
Cla07g01080 1039 ProSiteProfiles RWP-RK domain profile. 627 708 IPR003035 -
Cla07g01080 1039 Gene3D - 942 1025 - -
Cla07g01080 1039 ProSiteProfiles PB1 domain profile. 944 1026 IPR000270 GO:0005515
Cla07g01080 1039 MobiDBLite consensus disorder prediction 596 638 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g01080 - - - csv:101212500 1912.12
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g01080 Cla-Chr7:27410322 Cla07g01106 Cla-Chr7:27770327 1.83E-18 dispersed
Cla07g01080 Cla-Chr7:27410322 Cla11g01823 Cla-Chr11:31885237 1.42E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g190 . . Bda06g00162 . Bpe05g00708 Bpe07g00057 . . Cmo06g00603 Cmo16g00577 . . . . . Cpe14g00447 . . . . . . . . Cla07g01080 Cam07g1420 Cec07g1236 Cco07g1216 Clacu07g1141 Cmu07g1123 Cre07g1500 . . . . . . . Cme07g01523 . . . . . . . . . . . Cma06g00596 Cma16g00528 . . . . . . . . . . . . . . . . . . . . Chy07g01125 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla07g01080 . 224 1039 NLP Transcription Factor Family AT1G64530 51.8 5.3e-217 751.1
Cla07g01080 . 303 1039 NLP Transcription Factor Family AT4G24020 54.5 7.9e-197 684.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003291 3 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 7 2 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61443 PF00564 PB1 8.10E-19 CL0072 Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla07g01080 Cla_Chr07 FPKM 17.289673 22.190008 0.0 0.0 0.738841 0.0 0.728384 0.0 0.0 0.0