Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g01086 ATGGCTAATCGGGGAGGAGGGTCATTTTTACCCTCAAGTATTCCGCCTCAAGGTTGGGCAGGAGATGAACTTTACGCTGAGCTATGGAGAGTCTCGGCTGGGCCTCTTGTGGAAATTCCTCGAGTTAATGAGAAGGTTCTTTATTTTCCTCAAGGCCACATGGAACAGTTGGAGGCATCTACAAATCAGGAGCTAAATCAGAAACTTCCTTTATTTAATCTTTCCTCCAAAATTCTCTGTCAAGTAGTTGATACCCGGCTGCTGGCAGAGCAGGACAGTGATGAGGTTTATGCACAGATAACTTTAATGCCAGAAGCAAATCAAGAGTTACCTACGAGTCTTGAACCTTCACCCCCAGAGTGTCGAAAACCGAAAGTCCATTCGTTTTGCAAGGTTTTAACTGCTTCTGATACTAGCACCCATGGGGGGTTCTCCGTGCTCCGGAAACATGCCACCGAATGCCTGCCTCCATTGGATATGACCCAGCAGACCCCAACTCAGGAACTCGTAGCCAAAGATCTTCATGGTTTCGAGTGGCGATTCAAGCATATATTTAGGGGTGAGCCTCCTTCCCGTTACTCTGATTACAACCGCATGTTTATGAACAGTCAACCACGACGGCATTTGCTGACGACCGGATGGAGCACCTTTGTTACTTCTAAGAGACTAGTTGCTGGAGATTCTTTTGTGTTCTTGAGGTATCTTGATTTTCCTTTTGTGGATGTTCATCAATGGGGGGAAGGGGGGGAAAATGGGGAATTGCGAGTTGGAGTGAGGCGTCTTGCTCGCCAACAGAGCAGCATGCCTTCATCTGTGATTTCAAGTCACAGCATGCACTTAGGAGTGCTTGCTACTGCATCTCATGCCGTGTCAACTCAAACTCGCTTTGTTGTCTATTATAAGCCAAGGGCAAGCCAGTTTATCGTCAGCTTGAATAAGTACATAGAAGCGATGAACTATAAGTTCTCAGTTGGGATGAGGTTCAAGATGAGGTTTGAGGGAGAGGAGTCTCCAGAGAGAAGGTTTTCGGGTACCATAGTTGGAGTTGACGACATGTCTCCTCACTGGACCAATTCAGACTGGCGATCACTGAGAATTCAATGGGATGAACTTGCATCTATTCAGAGACCTGATAGAGTTTCACCATGGGAGATTGAACCTTTTGTGGCTCCTACGTCCCCAAGCATTCCGCACTCTATTTCCATAAAGAATAAAAGGCCTCGGCCTCCACTTGAAATTCTAGGTATTGCTGAGGATTCTGATAATTCAACTGTAACAACTCTAAGACATCCAGGATCATCTCAATCACATGATGATAGAACACAGCTGAGTGTTGCTGCTGCTGAAATTAAAAGATTTGAAAATCATGCAACACGGCATTACAAGCAAACGGATGTTAGCAGCAATGGGAATTCTGTATCAAGGAGTCCGATGGAGGGCTCTTGGTTAACTTCTCCGAATGGGAGTGTTTCTCAGCATCGGTTACAGGAATTGACAGATGACCGTAAGAGCAGTTCTGTTTGGTCAACGGTCTTTCCAGGAGTGCTGGCATCAAACTCGACATGTCCAACTCCACGCCCATCAAATCCAAAGAGTGACCAAGTACATGACCTTGGGGAAAAGGGGAGGAAAACTGAAGTGGCTCCAAGCTGTCGCTTGTTCGGGATCGAGCTCATCAATCATTCTAAGAGCCCAGTTCCTCCTGAAAGGGTGCCCGATCAACCAATTAGCGCACCAAATGAAATCACTGATGCAGAGCAGAACTCAAACCTGCCAAAGGCTTCTAAAGAAAGAAAATTAGGACTTTTACAAGTACCTCCTAAAGAGATCCAGCACAAGCAGAACAGCTCGACCAGCAGCCGAAGCCGTACTAAGGTACAAATGCAGGGGATGGCCGTCGGACGTGCGGTAGACCTTACCACATTGGAGGGGTATGGCCAACTTATTGATGAACTAGAAAAGATGTTTGATATCAAGGGAGAACTTCGCCCTCGTAATAAGTGGGAGATCGTCTTCACTGACGATGAAGGAGATACGATGCTCATGGGCGACTACCCATGGCAGGAATTCTGTAACATGGTGAGAAGAATATACATATGGTCAAGTCAGGATGTGAAGATGAGTTCGGGTAGCAAACTTGCGATGTCTACAATCGAATGTGACGGGACTGTAATAACCTCGGAGTCAGCCGACAGCTGA 2199 46.48 MANRGGGSFLPSSIPPQGWAGDELYAELWRVSAGPLVEIPRVNEKVLYFPQGHMEQLEASTNQELNQKLPLFNLSSKILCQVVDTRLLAEQDSDEVYAQITLMPEANQELPTSLEPSPPECRKPKVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMTQQTPTQELVAKDLHGFEWRFKHIFRGEPPSRYSDYNRMFMNSQPRRHLLTTGWSTFVTSKRLVAGDSFVFLRYLDFPFVDVHQWGEGGENGELRVGVRRLARQQSSMPSSVISSHSMHLGVLATASHAVSTQTRFVVYYKPRASQFIVSLNKYIEAMNYKFSVGMRFKMRFEGEESPERRFSGTIVGVDDMSPHWTNSDWRSLRIQWDELASIQRPDRVSPWEIEPFVAPTSPSIPHSISIKNKRPRPPLEILGIAEDSDNSTVTTLRHPGSSQSHDDRTQLSVAAAEIKRFENHATRHYKQTDVSSNGNSVSRSPMEGSWLTSPNGSVSQHRLQELTDDRKSSSVWSTVFPGVLASNSTCPTPRPSNPKSDQVHDLGEKGRKTEVAPSCRLFGIELINHSKSPVPPERVPDQPISAPNEITDAEQNSNLPKASKERKLGLLQVPPKEIQHKQNSSTSSRSRTKVQMQGMAVGRAVDLTTLEGYGQLIDELEKMFDIKGELRPRNKWEIVFTDDEGDTMLMGDYPWQEFCNMVRRIYIWSSQDVKMSSGSKLAMSTIECDGTVITSESADS 732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 27556698 27560638 - ClCG07G011440.2 Cla07g01086 277074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g01086 732 PANTHER AUXIN RESPONSE FACTOR 9 19 719 - -
Cla07g01086 732 MobiDBLite consensus disorder prediction 454 546 - -
Cla07g01086 732 Pfam AUX/IAA family 609 657 IPR033389 -
Cla07g01086 732 Pfam AUX/IAA family 668 704 IPR033389 -
Cla07g01086 732 Gene3D - 321 392 - -
Cla07g01086 732 SUPERFAMILY CAD & PB1 domains 615 697 - -
Cla07g01086 732 MobiDBLite consensus disorder prediction 502 531 - -
Cla07g01086 732 Pfam Auxin response factor 286 364 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cla07g01086 732 ProSiteProfiles B3 DNA-binding domain profile. 129 262 IPR003340 GO:0003677
Cla07g01086 732 Pfam B3 DNA binding domain 129 232 IPR003340 GO:0003677
Cla07g01086 732 ProSiteProfiles PB1 domain profile. 621 702 IPR000270 GO:0005515
Cla07g01086 732 MobiDBLite consensus disorder prediction 420 441 - -
Cla07g01086 732 MobiDBLite consensus disorder prediction 609 625 - -
Cla07g01086 732 CDD B3_DNA 127 260 IPR003340 GO:0003677
Cla07g01086 732 SUPERFAMILY DNA-binding pseudobarrel domain 116 289 IPR015300 -
Cla07g01086 732 Gene3D - 126 261 IPR015300 -
Cla07g01086 732 MobiDBLite consensus disorder prediction 462 494 - -
Cla07g01086 732 MobiDBLite consensus disorder prediction 562 625 - -
Cla07g01086 732 SMART B3_2 129 246 IPR003340 GO:0003677
Cla07g01086 732 Gene3D - 616 708 - -
Cla07g01086 732 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 719 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00174 Cla-Chr1:1744753 Cla07g01086 Cla-Chr7:27556698 0 dispersed
Cla07g01086 Cla-Chr7:27556698 Cla09g00886 Cla-Chr9:9118977 0 dispersed
Cla07g01086 Cla-Chr7:27556698 Cla03g00607 Cla-Chr3:7181134 9.19E-12 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61444 PF02362 B3 5.80E-15 CL0405 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g01086 K14486 - csv:101213942 1212.59