Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla07g01086 | ATGGCTAATCGGGGAGGAGGGTCATTTTTACCCTCAAGTATTCCGCCTCAAGGTTGGGCAGGAGATGAACTTTACGCTGAGCTATGGAGAGTCTCGGCTGGGCCTCTTGTGGAAATTCCTCGAGTTAATGAGAAGGTTCTTTATTTTCCTCAAGGCCACATGGAACAGTTGGAGGCATCTACAAATCAGGAGCTAAATCAGAAACTTCCTTTATTTAATCTTTCCTCCAAAATTCTCTGTCAAGTAGTTGATACCCGGCTGCTGGCAGAGCAGGACAGTGATGAGGTTTATGCACAGATAACTTTAATGCCAGAAGCAAATCAAGAGTTACCTACGAGTCTTGAACCTTCACCCCCAGAGTGTCGAAAACCGAAAGTCCATTCGTTTTGCAAGGTTTTAACTGCTTCTGATACTAGCACCCATGGGGGGTTCTCCGTGCTCCGGAAACATGCCACCGAATGCCTGCCTCCATTGGATATGACCCAGCAGACCCCAACTCAGGAACTCGTAGCCAAAGATCTTCATGGTTTCGAGTGGCGATTCAAGCATATATTTAGGGGTGAGCCTCCTTCCCGTTACTCTGATTACAACCGCATGTTTATGAACAGTCAACCACGACGGCATTTGCTGACGACCGGATGGAGCACCTTTGTTACTTCTAAGAGACTAGTTGCTGGAGATTCTTTTGTGTTCTTGAGGTATCTTGATTTTCCTTTTGTGGATGTTCATCAATGGGGGGAAGGGGGGGAAAATGGGGAATTGCGAGTTGGAGTGAGGCGTCTTGCTCGCCAACAGAGCAGCATGCCTTCATCTGTGATTTCAAGTCACAGCATGCACTTAGGAGTGCTTGCTACTGCATCTCATGCCGTGTCAACTCAAACTCGCTTTGTTGTCTATTATAAGCCAAGGGCAAGCCAGTTTATCGTCAGCTTGAATAAGTACATAGAAGCGATGAACTATAAGTTCTCAGTTGGGATGAGGTTCAAGATGAGGTTTGAGGGAGAGGAGTCTCCAGAGAGAAGGTTTTCGGGTACCATAGTTGGAGTTGACGACATGTCTCCTCACTGGACCAATTCAGACTGGCGATCACTGAGAATTCAATGGGATGAACTTGCATCTATTCAGAGACCTGATAGAGTTTCACCATGGGAGATTGAACCTTTTGTGGCTCCTACGTCCCCAAGCATTCCGCACTCTATTTCCATAAAGAATAAAAGGCCTCGGCCTCCACTTGAAATTCTAGGTATTGCTGAGGATTCTGATAATTCAACTGTAACAACTCTAAGACATCCAGGATCATCTCAATCACATGATGATAGAACACAGCTGAGTGTTGCTGCTGCTGAAATTAAAAGATTTGAAAATCATGCAACACGGCATTACAAGCAAACGGATGTTAGCAGCAATGGGAATTCTGTATCAAGGAGTCCGATGGAGGGCTCTTGGTTAACTTCTCCGAATGGGAGTGTTTCTCAGCATCGGTTACAGGAATTGACAGATGACCGTAAGAGCAGTTCTGTTTGGTCAACGGTCTTTCCAGGAGTGCTGGCATCAAACTCGACATGTCCAACTCCACGCCCATCAAATCCAAAGAGTGACCAAGTACATGACCTTGGGGAAAAGGGGAGGAAAACTGAAGTGGCTCCAAGCTGTCGCTTGTTCGGGATCGAGCTCATCAATCATTCTAAGAGCCCAGTTCCTCCTGAAAGGGTGCCCGATCAACCAATTAGCGCACCAAATGAAATCACTGATGCAGAGCAGAACTCAAACCTGCCAAAGGCTTCTAAAGAAAGAAAATTAGGACTTTTACAAGTACCTCCTAAAGAGATCCAGCACAAGCAGAACAGCTCGACCAGCAGCCGAAGCCGTACTAAGGTACAAATGCAGGGGATGGCCGTCGGACGTGCGGTAGACCTTACCACATTGGAGGGGTATGGCCAACTTATTGATGAACTAGAAAAGATGTTTGATATCAAGGGAGAACTTCGCCCTCGTAATAAGTGGGAGATCGTCTTCACTGACGATGAAGGAGATACGATGCTCATGGGCGACTACCCATGGCAGGAATTCTGTAACATGGTGAGAAGAATATACATATGGTCAAGTCAGGATGTGAAGATGAGTTCGGGTAGCAAACTTGCGATGTCTACAATCGAATGTGACGGGACTGTAATAACCTCGGAGTCAGCCGACAGCTGA | 2199 | 46.48 | MANRGGGSFLPSSIPPQGWAGDELYAELWRVSAGPLVEIPRVNEKVLYFPQGHMEQLEASTNQELNQKLPLFNLSSKILCQVVDTRLLAEQDSDEVYAQITLMPEANQELPTSLEPSPPECRKPKVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMTQQTPTQELVAKDLHGFEWRFKHIFRGEPPSRYSDYNRMFMNSQPRRHLLTTGWSTFVTSKRLVAGDSFVFLRYLDFPFVDVHQWGEGGENGELRVGVRRLARQQSSMPSSVISSHSMHLGVLATASHAVSTQTRFVVYYKPRASQFIVSLNKYIEAMNYKFSVGMRFKMRFEGEESPERRFSGTIVGVDDMSPHWTNSDWRSLRIQWDELASIQRPDRVSPWEIEPFVAPTSPSIPHSISIKNKRPRPPLEILGIAEDSDNSTVTTLRHPGSSQSHDDRTQLSVAAAEIKRFENHATRHYKQTDVSSNGNSVSRSPMEGSWLTSPNGSVSQHRLQELTDDRKSSSVWSTVFPGVLASNSTCPTPRPSNPKSDQVHDLGEKGRKTEVAPSCRLFGIELINHSKSPVPPERVPDQPISAPNEITDAEQNSNLPKASKERKLGLLQVPPKEIQHKQNSSTSSRSRTKVQMQGMAVGRAVDLTTLEGYGQLIDELEKMFDIKGELRPRNKWEIVFTDDEGDTMLMGDYPWQEFCNMVRRIYIWSSQDVKMSSGSKLAMSTIECDGTVITSESADS | 732 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 27556698 | 27560638 | - | ClCG07G011440.2 | Cla07g01086 | 277074 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla07g01086 | 732 | PANTHER | AUXIN RESPONSE FACTOR 9 | 19 | 719 | - | - | |
Cla07g01086 | 732 | MobiDBLite | consensus disorder prediction | 454 | 546 | - | - | |
Cla07g01086 | 732 | Pfam | AUX/IAA family | 609 | 657 | IPR033389 | - | |
Cla07g01086 | 732 | Pfam | AUX/IAA family | 668 | 704 | IPR033389 | - | |
Cla07g01086 | 732 | Gene3D | - | 321 | 392 | - | - | |
Cla07g01086 | 732 | SUPERFAMILY | CAD & PB1 domains | 615 | 697 | - | - | |
Cla07g01086 | 732 | MobiDBLite | consensus disorder prediction | 502 | 531 | - | - | |
Cla07g01086 | 732 | Pfam | Auxin response factor | 286 | 364 | IPR010525 | GO:0003677|GO:0005634|GO:0006355|GO:0009725 | |
Cla07g01086 | 732 | ProSiteProfiles | B3 DNA-binding domain profile. | 129 | 262 | IPR003340 | GO:0003677 | |
Cla07g01086 | 732 | Pfam | B3 DNA binding domain | 129 | 232 | IPR003340 | GO:0003677 | |
Cla07g01086 | 732 | ProSiteProfiles | PB1 domain profile. | 621 | 702 | IPR000270 | GO:0005515 | |
Cla07g01086 | 732 | MobiDBLite | consensus disorder prediction | 420 | 441 | - | - | |
Cla07g01086 | 732 | MobiDBLite | consensus disorder prediction | 609 | 625 | - | - | |
Cla07g01086 | 732 | CDD | B3_DNA | 127 | 260 | IPR003340 | GO:0003677 | |
Cla07g01086 | 732 | SUPERFAMILY | DNA-binding pseudobarrel domain | 116 | 289 | IPR015300 | - | |
Cla07g01086 | 732 | Gene3D | - | 126 | 261 | IPR015300 | - | |
Cla07g01086 | 732 | MobiDBLite | consensus disorder prediction | 462 | 494 | - | - | |
Cla07g01086 | 732 | MobiDBLite | consensus disorder prediction | 562 | 625 | - | - | |
Cla07g01086 | 732 | SMART | B3_2 | 129 | 246 | IPR003340 | GO:0003677 | |
Cla07g01086 | 732 | Gene3D | - | 616 | 708 | - | - | |
Cla07g01086 | 732 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 19 | 719 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g00174 | Cla-Chr1:1744753 | Cla07g01086 | Cla-Chr7:27556698 | 0 | dispersed | |
Cla07g01086 | Cla-Chr7:27556698 | Cla09g00886 | Cla-Chr9:9118977 | 0 | dispersed | |
Cla07g01086 | Cla-Chr7:27556698 | Cla03g00607 | Cla-Chr3:7181134 | 9.19E-12 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61444 | PF02362 | B3 | 5.80E-15 | CL0405 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla07g01086 | K14486 | - | csv:101213942 | 1212.59 |