Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g01094 ATGGAGAATCTCATTTCTCTCGTTAACAAAATTCAGAGGGCCTGTACGGCGCTTGGTGACCATGGCGAAGCTAGCGCATTGCCTACACTCTGGGACTCCTTGCCGGCTATCGCCGTCGTCGGTGGCCAAAGTTCGGGCAAATCTTCAGTGTTGGAAAGTATTGTCGGCAAGGATTTCTTACCTCGTGGATCTGGTATTGTTACTAGGCGACCTCTTGTCTTGCAACTTCATAAAAGTGACGAAGGAAGCAGAGAGTATGCAGAGTTTCTCCACCTTCCCAGGAAAAGATTTACTGATTTTGTTGCTGTCAGGAAGGAAATTCAAGATGAGACTGATCGAGAGACTGGTCGTTCTAAACAAATTTCTAGTGTCCCAATTCATCTCAGTATATATTCTCCCAATGTTGTAAACTTGACACTTATTGATCTTCCTGGGCTTACAAAAGTAGCCGTCGAGGGGCAGCCAGAGAGTATTGTTCAAGAAATTGAAATGATGGTTCGCTCCTATATTGAAAAGCCTAATTGTATTATACTTGCTATTTCACCTGCCAATCAAGATTTGGCTACATCTGATGCGATTAAAATCTCTCGTGAAGTTGATCCTACTGTGATTTTCTCAAGTGTTATTCGAAGGAGTAAATTTGTTTTTAAGGCCTCTTTAACCCTTTGCTATATTTTTCTCTTAGGGGAGAGAACTCTTGGTGTGTTGACGAAGATTGATCTCATGGATAAGGGAACAGATGCTGTTGATCGTTTTTGGCCCTTCAAAGAATTGATGTTTGAATCTTTTTTTTCCCTTGATTTGATGGATGCGTATTTACCTATTGTATCATGTATTCTAAATCGCATTCTTTGCATTGCTAAGATATTGGAAGGCAAAGCTTACAGGCTGAAGTTTCCTTGGGTTGGTGTCGTGAATCGTTCACAAGCAGACATCAACAAAAATGTTGACATGATTGCAGCTAGGCGTAGGGAGCGTGAATATTTTGCTAGCACTCCAGAATACAAGCACCTTGCCCATAGGATGGGCTCTGAGCATCTAGCAAAGGTCCTTTCAAAGCATCTAGAAACGGTAATCAAGTCCAAAATCCCTGGCATTCAAAACCTTATTAACAAGACCATTTCAGAACTTGAATCCGAACTAAGCCGTCTTGGAAGGCCTGTTGCAAATGATGCTGGAGGAAAACTATACATGATTATGGAGATTTGTCGTGCTTTTGATCAGAATTTTAAAGAACACCTGGATGGCGTGCGTCCTGGTGGAGATAAAATTTACAATGTCTTTGATGACCAACTTCCTGCTGCGCTTAAGAGGTTACAGTTTGACAGGCAGCTATCAATGGAAAATGTAAAGAAGCTTATTACTGAAGCTGATGGATATCAACCTCATTTAATTGCTCCTGAACAAGGATATCGTCGTCTTATTGAATCTACTTTAGTTACTATTAGAGGCCCAGCTGAGGCATGTGTTGATGCGGTTCATGCCATATTGAAGGATCTGGTTCACAAAGCTATGGGTGAAACTCTAGAATTAAAGCAGTATCCTGGTCTTAGAGTGGAGGTAGGAAACGCCGCTATTGAATCCCTGGAACGAATGAGGGAGCAAAGCAAGAAAGCATCACTTCAGCTTGTAGATATGGAGTGCAGTTACCTGACTGTTGATTTCTTCCGGAAGCTACCTCAAGATATTGAAAAGGGAGGCAACCCTACACATTCGATTTTTGACCGATACAATGACTCATATCTAAGGCGTGTCGGAACGACGGTGCTATCTTATGTCCATATGGTTTGTGCAAGCCTACGAAACTCGATTCCAAAGTCCATTGTTTATTGTCAAGTACGAGAGGCCAAAAGAAGCCTCCTCGACCACTTTTTCACCGAGTTGGGAAAACTTGAGCAAAAGCGCCTATCATCATTATTGAACGAGGATCCAGCGATAATGGAGCGGCGTTCTGCCCTAGCAAAGAGGCTCGAGTTATACAGAAGTGCACAAGCAGAAATCGACACGGTTGCTTGGTCGAAGTAA 2025 42.52 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKSDEGSREYAEFLHLPRKRFTDFVAVRKEIQDETDRETGRSKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVQEIEMMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTVIFSSVIRRSKFVFKASLTLCYIFLLGERTLGVLTKIDLMDKGTDAVDRFWPFKELMFESFFSLDLMDAYLPIVSCILNRILCIAKILEGKAYRLKFPWVGVVNRSQADINKNVDMIAARRREREYFASTPEYKHLAHRMGSEHLAKVLSKHLETVIKSKIPGIQNLINKTISELESELSRLGRPVANDAGGKLYMIMEICRAFDQNFKEHLDGVRPGGDKIYNVFDDQLPAALKRLQFDRQLSMENVKKLITEADGYQPHLIAPEQGYRRLIESTLVTIRGPAEACVDAVHAILKDLVHKAMGETLELKQYPGLRVEVGNAAIESLERMREQSKKASLQLVDMECSYLTVDFFRKLPQDIEKGGNPTHSIFDRYNDSYLRRVGTTVLSYVHMVCASLRNSIPKSIVYCQVREAKRSLLDHFFTELGKLEQKRLSSLLNEDPAIMERRSALAKRLELYRSAQAEIDTVAWSK 674
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 27634422 27646429 - ClCG07G011540.2 Cla07g01094 277082

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g01094 674 PRINTS Dynamin signature 34 52 IPR022812 -
Cla07g01094 674 PRINTS Dynamin signature 132 149 IPR022812 -
Cla07g01094 674 PRINTS Dynamin signature 182 200 IPR022812 -
Cla07g01094 674 PRINTS Dynamin signature 59 76 IPR022812 -
Cla07g01094 674 Pfam Dynamin central region 287 552 IPR000375 -
Cla07g01094 674 CDD DLP_1 33 364 IPR001401 GO:0003924|GO:0005525
Cla07g01094 674 ProSiteProfiles GED domain profile. 582 674 IPR020850 -
Cla07g01094 674 Coils Coil 529 549 - -
Cla07g01094 674 PANTHER DYNAMIN 229 250 IPR022812 -
Cla07g01094 674 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 372 IPR027417 -
Cla07g01094 674 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 31 201 IPR030381 GO:0005525
Cla07g01094 674 PANTHER DYNAMIN-LIKE PROTEIN 1E 288 673 - -
Cla07g01094 674 PANTHER DYNAMIN-LIKE PROTEIN 1E 2 202 - -
Cla07g01094 674 PANTHER DYNAMIN-LIKE PROTEIN 1E 229 250 - -
Cla07g01094 674 PANTHER DYNAMIN 288 673 IPR022812 -
Cla07g01094 674 PANTHER DYNAMIN 2 202 IPR022812 -
Cla07g01094 674 SMART dynamin_3 1 315 IPR001401 GO:0003924|GO:0005525
Cla07g01094 674 Pfam Dynamin family 37 203 IPR045063 -
Cla07g01094 674 Gene3D - 1 373 IPR027417 -
Cla07g01094 674 Gene3D Dynamin, middle domain 395 650 - -
Cla07g01094 674 SMART GED_2 577 670 IPR003130 GO:0003924|GO:0005525
Cla07g01094 674 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 60 69 IPR019762 -
Cla07g01094 674 Pfam Dynamin GTPase effector domain 578 670 IPR003130 GO:0003924|GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g01094 - - - csv:101209311 1146.72
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00113 Cla-Chr6:1202637 Cla07g01094 Cla-Chr7:27634422 0 dispersed
Cla06g00114 Cla-Chr6:1220502 Cla07g01094 Cla-Chr7:27634422 7.19E-167 dispersed
Cla07g01094 Cla-Chr7:27634422 Cla09g01176 Cla-Chr9:14179931 5.29E-117 dispersed
Cla07g01094 Cla-Chr7:27634422 Cla05g00294 Cla-Chr5:2702304 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g146 . . Bda06g00152 Bda08g00462 Bpe05g00697 Bpe07g00066 . . . . . . . . . Cpe14g00456 . . . . . . . . Cla07g01094 . Cec07g1258 Cco07g1235 . . Cre07g1519 . . Cone6ag0857 Cone9ag0859 . . . Cme07g01570 . . . . . . Bma05g00879 Bma12g00613 . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00667 Chy07g01144 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000261 5 7 3 6 5 5 6 5 5 5 4 4 4 6 5 6 4 8 5 5 5 5 5 5 5 4 4 8 5 5 154
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla07g01094 Cla_Chr07 FPKM 0.801498 0.686242 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0