Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g01098 ATGTCAGAGTCAGAAACGGTGACGGAACGCGTCGCATTGGGATTCGCATTTCTCCCAAACGGCTTCAGCTCTCTCAACTCAACGCAACAACATCACTCTTTCTCTCCTCACTTCTTCAATATGAGTTCCAAGATCTGCAGATCTGCCTCCAGAGCCGCCAGGTCCATCCTCAATGCTTCCCGGAGCTCTCGCGCTTATACCACTGGAGGCAGAGCCGTGGCTTCCGCAGCAGCAGTATCGCTAAGAGAAAAGTTGCCTTCTCTTGCTTCAATCTATGAGAATGCCGGTTCTGGATACGCATCTAGAGGATGGATTTCAGGACTGCTTGCCCTTCCTGCTGGAGCTTTCATGCTCCAGGAGCAGGAAGCACATGCTGCAGAGTTTGAGCGCACGTTTATAGCCATCAAGCCAGATGGTGTACAGAGAGGGCTGATCTCAGAAATCATATCCCGTTTCGAGAGGAAAGGGTTTAAACTTGTAGGCATAAAAGTTATTGTCCCTTCAAAGGAATTTGCTGAGAAGCATTATCACGATCTGAAGGAAAGACCCTTCTTTAATGGCCTCTGTGAATTTCTTAGCTCCGGCCCCGTCATTGCAATGGTTTGGGAAGGCGAGGGAGTGATCAGATATGGACGAAAACTTATTGGAGCAACAGATCCACAGAAATCTGAGCCCGGTACCATTCGAGGAGATCTAGCTGTTGTAGTTGGCAGGAACATCATCCATGGAAGCGATGGACCAGAGACAGCCAAAGATGAGATCAAGTTGTGGTTCAAGCCAGAGGAATTGGGAAGTAAAAATGTATGGTTTTCTTGGATCCCCAGTCTGCTTATCTCTGACTATGCTTCTCTCTTTTGTTGGGCAATTGAGACTCTTAACACCCAGGATCTCCCAAAGTGTTCTGCCCTAATTCTTCACCGGTGTTTCTCCGGTCGATTTTCTAGCGGCGAATTATCTTCTCGTCAAGAGATGGCGGCTAAACCACTTACTACCGAGGCAATTGCCATAACTGAGAAGAAGATGGACATGGCTTTAGACGACATTATTAAAATGTCCAAAAATACGGGGAATAAAGGCAGGAAGCAAAGAAGGTTACCGAACAAATTGCAGAAATTTCCAAATAATGCTACCCAAGATAGACCTAGGAAGTTGCAACGTTTCATGGACTCTAGATCTTCTCTGAGACAGGGGGCTTTGGCCAATAGAAGGTCAAACTTTCAAGGGAATCAGTTTGCTTTGGCAACTGAGGTTGCAAGAAAGGCTGCAGTTGCTCCAATTCGCCCTAGACCTTTTAATCGCAGGGCACCCAATTGGAATAAAACAAGGGTTGATGCTCCACCGGTTCCGAGGAAGCCTTTCACCAATGGAACCTTCGTTCCCAAGGTATCTGCACCGGCCCAGCCGCAAACAAATGCCACGCCAAGACAGAGGCCACAAACTCTTGACTCACTGTTTGCCAACATGAAGGAACAGAGGTTGAGGGTGTTATCGCAGCGGCAAAATGGTGGTGGTGGGGTACAACAACAGCAACAACAACGGCATGGTGGTCGACAACAAAGACCTCCATGGGGGAAGAGGCCGTTTTGGTAA 1590 47.92 MSESETVTERVALGFAFLPNGFSSLNSTQQHHSFSPHFFNMSSKICRSASRAARSILNASRSSRAYTTGGRAVASAAAVSLREKLPSLASIYENAGSGYASRGWISGLLALPAGAFMLQEQEAHAAEFERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVIVPSKEFAEKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVIRYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEELGSKNVWFSWIPSLLISDYASLFCWAIETLNTQDLPKCSALILHRCFSGRFSSGELSSRQEMAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRLPNKLQKFPNNATQDRPRKLQRFMDSRSSLRQGALANRRSNFQGNQFALATEVARKAAVAPIRPRPFNRRAPNWNKTRVDAPPVPRKPFTNGTFVPKVSAPAQPQTNATPRQRPQTLDSLFANMKEQRLRVLSQRQNGGGGVQQQQQQRHGGRQQRPPWGKRPFW 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 27669565 27681637 - ClCG07G011580.2 Cla07g01098 277086

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g01098 529 CDD NDPk_I 129 258 - -
Cla07g01098 529 MobiDBLite consensus disorder prediction 431 529 - -
Cla07g01098 529 Pfam Nucleoside diphosphate kinase 129 262 IPR034907 -
Cla07g01098 529 PRINTS Nucleoside diphosphate kinase signature 195 212 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Cla07g01098 529 PRINTS Nucleoside diphosphate kinase signature 239 258 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Cla07g01098 529 PRINTS Nucleoside diphosphate kinase signature 175 194 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Cla07g01098 529 PRINTS Nucleoside diphosphate kinase signature 131 153 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Cla07g01098 529 PRINTS Nucleoside diphosphate kinase signature 216 232 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Cla07g01098 529 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 43 264 - -
Cla07g01098 529 SMART ndk_5 128 265 IPR034907 -
Cla07g01098 529 MobiDBLite consensus disorder prediction 353 380 - -
Cla07g01098 529 MobiDBLite consensus disorder prediction 460 486 - -
Cla07g01098 529 SUPERFAMILY Nucleoside diphosphate kinase, NDK 128 263 IPR036850 -
Cla07g01098 529 MobiDBLite consensus disorder prediction 493 517 - -
Cla07g01098 529 ProSitePatterns Nucleoside diphosphate kinases active site. 239 247 IPR023005 -
Cla07g01098 529 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 43 264 - -
Cla07g01098 529 Hamap Nucleoside diphosphate kinase [ndk]. 128 263 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Cla07g01098 529 Gene3D - 121 273 IPR036850 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g01098 K00940 ndk, NME; nucleoside-diphosphate kinase [EC:2.7.4.6] - csv:101210301 404.445
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00008 Cla-Chr5:137606 Cla07g01098 Cla-Chr7:27669565 5.90E-54 dispersed
Cla07g01098 Cla-Chr7:27669565 Cla09g00100 Cla-Chr9:991155 1.64E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g140 . . . . . . . . . . . . . . . . . . . . . . . . Cla07g01098 Cam07g1400 Cec07g1260 Cco07g1240 Clacu07g1161 Cmu07g1141 Cre07g1521 . . Cone6ag0854 Cone9ag0856 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00662 Chy07g01149 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002103 2 2 3 3 3 2 2 2 1 2 2 1 2 2 2 2 2 4 2 1 2 2 3 2 2 2 2 3 2 2 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla07g01098 Cla_Chr07 FPKM 78.922348 74.294632 92.787651 96.431915 62.743774 62.727802 64.350739 83.132164 87.102966 93.982368