Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g01126 ATGGCTTCCAAAAATAATGATTCATTACACAGCTTCTGCACCAGCAGTCAGGATCCACTCAACTGGGGTGTGGCCGCTGACTCCATGAAGGGAAGTCATTTGGATGAGGTCAAGCGGATGGTGGAAGAGTATCGGACACCTTTGGTGAAGCTTGGAGGACAAACTCTCACCATTTCTCAAGTCGCTGCTATTGCCACTCGTGACAACGATGTCATCGTAGAATTGGCCGAGTCTGCGAGGGCCGGTGTAAAAGCCAGCAGCGATTGGGTGATGGAGAGCATGTGCAGAGGCACGGATAGTTATGGTGTTACTACTGGCTTTGGTGCCACTTCCCATAGAAGAACCAATCAAGGTGGAGCTCTTCAAAAGGAGTTGATCCGATTCTTGAATTCCGGTATCTTTGGGACTGGCAGTGAGTCGAGTCACACTTTGCCTCATTCTGCCACAAGGGCGGCCATGTTGGTGAGAATCAACACACTCCTACAAGGCTACTCCGGCATTAGATTCGAGATTTTGGAAGCCATTGCTAATCTCTTGAACCACAACGTTACTCCGTGTTTGCCACTTCGAGGAACAATTACAGCTTCTGGAGATTTGGTTCCTTTGTCTTATATTGCAGGGTTGCTCACCGGTCGCCACAATTCAAAAGCGATCGGACCCAATGGAGAACCTCTTGATGCAAAGGCTGCTTTTGAACAAGCTGGCATTCATTCTGGGTTCTTCGAGTTGCAACCTAAGGAAGGTCTTGCTCTTGTAAACGGCACCGCTGTCGGTTCTGGGTTGGCCTCCATTGTTCTCTTCGAGGCAAATATTTTGGCTGTTTTGTCTGAAATTCTATCTGCCATTTTTGCTGAGGTGATGCAAGGAAAGCCTGAATTCACCGACCATTTGACCCATAAGTTGAAGCACCACCCCGGCCAAATTGAAGCTGCTGCAATCATGGAGCACATTTTAGATGGAAGCTCCTACATGAAAACTGCTAAGAAACTGCATGAAATGGATCCTCTCCAAAAGCCCAAACAAGATCGTTATGCTCTTAGAACTTCTCCTCAATGGTTGGGTCCCTTGATCGAAGTGATCCGTTTCTCCACCAAGTCGATCGAGCGGGAAATTAATTCAGTCAATGACAACCCTTTGATTGATGTTTCAAGAAACAAGGCGTTGCATGGAGGTAACTTCCAAGGAACGCCAATTGGAGTTTCCATGGACAACACCCGTTTGGCCATTGCATCGATTGGAAAGCTCATGTTTGCCCAATTTTCAGAACTCGTCAATGATTTCTACAATAACGGTTTGCCTTCCAATCTTTCTGCAAGTAGAAACCCCAGCTTGGATTATGGATTCAAAGGTGCTGAGATTGCCATGGCCTCATACTGCTCTGAGCTCCAATATCTTGCAAATCCAGTGACGAGTCATGTCCAGAGCGCCGAGCAACACAACCAAGATGTTAACTCTCTTGGTTTAATTTCTTCAAGGAAAACCGCTGAAGCCATCGATATACTCAAACTCATGTCTTCCACATTTTTAGTTGCTCTTTGTCAAGCAATTGACTTGAGGCATTTGGAGGAAAACTTGAAGAGCACAGTGAAAAACACAGTTAGCCAAGTAGCAAAAAAGGTGTTGACTACATCCTCCAATGGCGCACTTCACCCATCAAGATTTTGTGAGAAAGATCTACTCAAAGTTGTTGACCGAGAATACACTTTTGCATACATCGATGATCCATGCAGTGCTACTTACCCACTTATGCAAAAGTTGAGGCAAGTTCTTGTTGAGCATGCACTTGAAAATGGCGATAACGAAGTCAACGCAAACACTTCAATCTTCCAAAAGATCGGTGCTTTCGAAGAGGAATTAAAGGCAATCTTACCGAAGGAGGTTGAAAATGTAAGGATTGCATATGAGAGTGGGAACTCTAAAATTGAAAATCAAATCAAGGATTGCAGATCTTACCCATTATACAGATTTGTGAGAGAGGAGTTGGGAACAAGCTTGCTAAGTGGCGAAAAGGTGATATCTCCTGGAGAAGAGTGTGAGAAGGTATTCACGGCTTTATGTCAAGGAAAAATGATCGACTCTATCTTCGAATGCTTGAAGGAGTGGAATGGAGCACCAATCCCTATTTGCTAA 2130 44.98 MASKNNDSLHSFCTSSQDPLNWGVAADSMKGSHLDEVKRMVEEYRTPLVKLGGQTLTISQVAAIATRDNDVIVELAESARAGVKASSDWVMESMCRGTDSYGVTTGFGATSHRRTNQGGALQKELIRFLNSGIFGTGSESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAIANLLNHNVTPCLPLRGTITASGDLVPLSYIAGLLTGRHNSKAIGPNGEPLDAKAAFEQAGIHSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKNTVSQVAKKVLTTSSNGALHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLMQKLRQVLVEHALENGDNEVNANTSIFQKIGAFEEELKAILPKEVENVRIAYESGNSKIENQIKDCRSYPLYRFVREELGTSLLSGEKVISPGEECEKVFTALCQGKMIDSIFECLKEWNGAPIPIC 709
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 28135308 28137437 - ClCG07G011872.1 Cla07g01126 277114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g01126 709 CDD PAL-HAL 54 519 IPR001106 -
Cla07g01126 709 Gene3D Fumarase/aspartase (Central domain) 256 704 - -
Cla07g01126 709 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 191 207 IPR022313 GO:0016841
Cla07g01126 709 SUPERFAMILY L-aspartase-like 18 709 IPR008948 GO:0003824
Cla07g01126 709 PANTHER HISTIDINE AMMONIA-LYASE 14 709 IPR001106 -
Cla07g01126 709 Gene3D - 522 643 IPR023144 -
Cla07g01126 709 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 14 709 - -
Cla07g01126 709 Pfam Aromatic amino acid lyase 56 531 IPR001106 -
Cla07g01126 709 Gene3D - 10 255 IPR024083 -
Cla07g01126 709 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 18 699 IPR005922 GO:0005737|GO:0006559|GO:0016841
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00900 Cla-Chr4:24005112 Cla07g01126 Cla-Chr7:28135308 0 dispersed
Cla07g01126 Cla-Chr7:28135308 Cla08g00772 Cla-Chr8:20117545 0 dispersed
Cla07g01128 Cla-Chr7:28165666 Cla07g01126 Cla-Chr7:28135308 0 dispersed
Cla07g01126 Cla-Chr7:28135308 Cla07g01127 Cla-Chr7:28138988 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g01126 K10775 - csv:116401606 1328.15