Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g01127 ATGGCCCAAAAGGTTTGTGCTCACCAAAATGGTTCAATGGAGAGCTTGTGCAGCACCCATCAGGATCCACTCAACTGGGGTTTGGCCGCTGACTCCATGAAGGGAAGTCATTTGGATGAGGTCAAGCGGATGGTGGAAGAGTATCGGTCACCTTTGGTGAAGCTTGGAGGACAAACTCTCACCATTTCTCAAGTCGCTGCCATTGCCACTCGTGACAACGATGTCATCGTAGAATTGGCCGAGTCTGCGAGGGCCGGTGTAAAAGCCAGCAGCGATTGGGTGATGGAGAGCATGTGCAGAGGCACGGATAGTTATGGTGTTACTACTGGCTTTGGTGCCACTTCCCATAGAAGAACCAATCAAGGTGGAGCTCTTCAAAAGGAGTTGATCCGATTCTTGAATTCCGGTATCTTTGGGACTGGCAGTGAGTCGAGTCACACTTTGCCTCATTCTGCCACAAGGGCGGCCATGTTGGTGAGAATCAACACACTCCTACAAGGCTACTCCGGCATTAGATTCGAGATTTTGGAAGCCATTGCTAATCTCTTGAACCACAACGTTACTCCGTGTTTGCCACTTCGAGGAACAATTACAGCTTCTGGAGATTTGGTTCCTTTGTCTTATATTGCAGGGTTGCTCACCGGTCGCCACAATTCAAAAGCGATCGGACCCAATGGAGAACCTCTTGATGCAAAGGCTGCTTTTGAACAAGCTGGCATTCATTCTGGGTTCTTCGAGTTGCAACCTAAGGAAGGTCTTGCTCTTGTAAACGGCACCGCTGTCGGTTCTGGGTTGGCCTCCATTGTTCTCTTCGAGGCAAATATTTTGGCTGTTTTGTCTGAAATTCTATCTGCCATTTTTGCTGAGGTGATGCAAGGAAAGCCTGAATTCACCGACCATTTGACCCATAAGTTGAAGCACCACCCCGGCCAAATTGAAGCTGCTGCAATCATGGAGCACATTTTAGATGGAAGCTCCTACATGAAAACTGCTAAGAAACTGCATGAAATGGATCCTCTCCAAAAGCCCAAACAAGATCGTTATGCTCTTAGAACTTCTCCTCAATGGTTGGGTCCCTTGATCGAAGTGATCCGTTTCTCCACCAAGTCGATCGAGCGGGAAATTAATTCAGTCAATGACAACCCTTTGATTGATGTTTCAAGAAACAAGGCGTTGCATGGAGGTAACTTCCAAGGAACGCCAATTGGAGTTTCCATGGACAACACCCGTTTGGCCATTGCATCGATTGGAAAGCTCATGTTTGCCCAATTTTCAGAACTCGTCAATGATTTCTACAATAACGGTTTGCCTTCCAATCTTTCTGCAAGTAGAAACCCCAGCTTGGATTATGGATTCAAAGGTGCTGAGATTGCCATGGCCTCATACTGCTCTGAGCTCCAATATCTTGCAAATCCAGTGACGAGTCATGTCCAGAGCGCCGAGCAACACAACCAAGATGTTAACTCTCTTGGTTTAATTTCTTCAAGGAAAACCGCTGAAGCCATCGATATACTCAAACTCATGTCTTCCACATTTTTAGTTGCTCTTTGTCAAGCAATTGACTTGAGGCATTTGGAGGAAAACTTGAAGAGCACAGTGAAAAACACAGTTAGCCAAGTAGCAAAAAAGGTGTTGACTACATCCTCCAATGGCGCACTTCACCCATCAAGATTTTGTGAGAAAGATCTACTCAAAGTTGTTGACCGAGAATACACTTTTGCATACATCGATGATCCATGCAGTGCTACTTACCCACTTATGCAAAAGTTGAGGCAAGTTCTTGTTGAGCATGCACTTGAAAATGGCGATAACGAAGTCAACGCAAACACTTCAATCTTCCAAAAGATCGGTGCTTTCGAAGAGGAATTAAAGGCAATCTTACCGAAGGAGGTTGAAAATGTAAGGATTGCATATGAGAGTGGGAACTCTAAAATTGAAAATCAAATCAAGGATTGCAGATCTTACCCATTATACAGATTTGTGAGAGAGGAGTTGGGAACAAGCTTGCTAAGTGGCGAAAAGGTGATATCTCCTGGAGAAGAGTGTGAGAAGGTATTCACGGCTTTATGTCAAGGAAAAATGATCGACTCTATCTTCGAATGCTTGAAGGAGTGGAATGGAGCACCAATCCCTATTTGCTAA 2142 45.19 MAQKVCAHQNGSMESLCSTHQDPLNWGLAADSMKGSHLDEVKRMVEEYRSPLVKLGGQTLTISQVAAIATRDNDVIVELAESARAGVKASSDWVMESMCRGTDSYGVTTGFGATSHRRTNQGGALQKELIRFLNSGIFGTGSESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAIANLLNHNVTPCLPLRGTITASGDLVPLSYIAGLLTGRHNSKAIGPNGEPLDAKAAFEQAGIHSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKNTVSQVAKKVLTTSSNGALHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLMQKLRQVLVEHALENGDNEVNANTSIFQKIGAFEEELKAILPKEVENVRIAYESGNSKIENQIKDCRSYPLYRFVREELGTSLLSGEKVISPGEECEKVFTALCQGKMIDSIFECLKEWNGAPIPIC 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 28138988 28141560 + ClCG07G011875.1 Cla07g01127 277115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g01127 713 CDD PAL-HAL 58 523 IPR001106 -
Cla07g01127 713 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 22 703 IPR005922 GO:0005737|GO:0006559|GO:0016841
Cla07g01127 713 Gene3D Fumarase/aspartase (Central domain) 260 708 - -
Cla07g01127 713 Gene3D - 526 647 IPR023144 -
Cla07g01127 713 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 18 713 - -
Cla07g01127 713 Gene3D - 14 259 IPR024083 -
Cla07g01127 713 PANTHER HISTIDINE AMMONIA-LYASE 18 713 IPR001106 -
Cla07g01127 713 Pfam Aromatic amino acid lyase 60 535 IPR001106 -
Cla07g01127 713 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 195 211 IPR022313 GO:0016841
Cla07g01127 713 SUPERFAMILY L-aspartase-like 22 713 IPR008948 GO:0003824
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00897 Cla-Chr4:23990787 Cla07g01127 Cla-Chr7:28138988 0 dispersed
Cla04g00898 Cla-Chr4:23995990 Cla07g01127 Cla-Chr7:28138988 0 dispersed
Cla04g00899 Cla-Chr4:24000234 Cla07g01127 Cla-Chr7:28138988 0 dispersed
Cla07g01127 Cla-Chr7:28138988 Cla08g00772 Cla-Chr8:20117545 0 dispersed
Cla07g01126 Cla-Chr7:28135308 Cla07g01127 Cla-Chr7:28138988 0 tandem
Cla07g01127 Cla-Chr7:28138988 Cla07g01128 Cla-Chr7:28165666 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g01127 K10775 - csv:101204574 1353.58