Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla07g01152 ATGGACACAGAGGAAGCTCCATCGACACCGGTGACGCCGGGGACTCCCGGGGCTCCGCTGTTTGGACGAGTGAAGGATAATCAGCATGGAAGTGAGAATGGTAAAAGATCTCTTCTCAAGAGCTGCATCTCTTTCAATGTTGATGATAATTGGGGCAGTGAAGAAGGAGGCTTATCTAAACTAGTCTCTTCTTGTTCATTGCCGTACCCTCCTGTCTCACTTGCAAGAAAGGTGGGAGCGGAGTTCATAGGTACCTCGATACTCATCTTTGCCGGAACCGCCACGGCCATCGTGAACCAAAAGACGAAAGGAACCGAAACACTGATTGGGCTGGCGGCCTCCACCGGCCTTGCGGTGATGATTGTGATCTTGTCGACGGGTCACATCTCTGGAGCCCATCTGAATCCGGCCATCACCATTGCTTTTGCTGCGTTGAAGCAGTTTCCATGGAAGCATGTGCCAGTGTATATTGGAGCTCAAATGGTGGCTTCTTTGTGTTCTTCTTTTGCATTGAAATGGATCTTTGATCCCATAATGGGAGGAGGAGCCACTGTTCCTTCATGTGGAAATGCCCAAGCTTTTGCTCTTGAGTTTATCATTAGCTTCAACCTCATGTTCGTCATCACTGCTGTCGCTACTGACACTCGGGCTGGGGATGACATGGAATTAGAAATGCAGGTGGGAGAATTGGCGGGAATCGCGGTAGGAGCAACCGTTATGCTCAATGTACTCATCGCCGGACAAACAACTGGAGCTTCAATGAATCCAGTAAGAACACTGGGGCCAGCCATTGCTGCAAACAACTTTAGAGCCATTTGGATTTACCTCACAGCTCCCATACTAGGGACATTGTGTGGAGCTGGAATCTACACTGCAGTTAAGTTGCCCGACAAAGATGGCAATTCACGCTTGCCTTCTACTGCAGGAAGCTTTCGAGGATGA 942 49.47 MDTEEAPSTPVTPGTPGAPLFGRVKDNQHGSENGKRSLLKSCISFNVDDNWGSEEGGLSKLVSSCSLPYPPVSLARKVGAEFIGTSILIFAGTATAIVNQKTKGTETLIGLAASTGLAVMIVILSTGHISGAHLNPAITIAFAALKQFPWKHVPVYIGAQMVASLCSSFALKWIFDPIMGGGATVPSCGNAQAFALEFIISFNLMFVITAVATDTRAGDDMELEMQVGELAGIAVGATVMLNVLIAGQTTGASMNPVRTLGPAIAANNFRAIWIYLTAPILGTLCGAGIYTAVKLPDKDGNSRLPSTAGSFRG 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 28462158 28466557 + ClCG07G012100.2 Cla07g01152 277140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla07g01152 313 ProSitePatterns MIP family signature. 133 141 IPR022357 -
Cla07g01152 313 Gene3D Glycerol uptake facilitator protein. 69 302 IPR023271 -
Cla07g01152 313 PANTHER AQUAPORIN NIP2-1 6 301 IPR034294 -
Cla07g01152 313 Pfam Major intrinsic protein 73 290 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla07g01152 313 SUPERFAMILY Aquaporin-like 72 299 IPR023271 -
Cla07g01152 313 PRINTS Major intrinsic protein family signature 196 214 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla07g01152 313 PRINTS Major intrinsic protein family signature 273 293 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla07g01152 313 PRINTS Major intrinsic protein family signature 115 139 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla07g01152 313 PRINTS Major intrinsic protein family signature 236 258 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla07g01152 313 PRINTS Major intrinsic protein family signature 152 171 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla07g01152 313 PRINTS Major intrinsic protein family signature 76 95 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla07g01152 313 PANTHER BNAA02G36290D PROTEIN 6 301 - -
Cla07g01152 313 MobiDBLite consensus disorder prediction 1 33 - -
Cla07g01152 313 CDD MIP 76 290 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00114 Cla-Chr1:1000302 Cla07g01152 Cla-Chr7:28462158 2.52E-96 dispersed
Cla07g01152 Cla-Chr7:28462158 Cla10g01436 Cla-Chr10:29546651 3.93E-64 dispersed
Cla07g01152 Cla-Chr7:28462158 Cla10g01892 Cla-Chr10:34818950 2.08E-21 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla07g01152 K09874 - csv:101207376 567.0